View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_10 (Length: 359)
Name: NF16612_high_10
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 4670935 - 4671269
Alignment:
| Q |
18 |
gttcttctattgtttataatcaagagactgttgttagacttaggcccctacactgcatcatgaatctgatcattttgggttgcaaaatcaatcatacaca |
117 |
Q |
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| T |
4670935 |
gttcttctattgtttataatcaagagactgttgttagacttaggcccctacactgcatcatgaatctgatcattttgggttgcaaaatcaatcatacaca |
4671034 |
T |
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| Q |
118 |
gagaaacnnnnnnnnnnnnnnc-aacctcaatgaatttggtttctggcatattaatatagataagaaaatggattaaacctggtacaagaccaccaccaa |
216 |
Q |
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| T |
4671035 |
gagaaacaaaaagcaaaaaaaccaacctcaatgaatttggtttctggcatattaatatagataagaaaatggattaaacctggtacaagaccaccaccaa |
4671134 |
T |
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| Q |
217 |
gcactctagaaacttcatttccaaaaggaccagacctgaaatcaaagccaaatacacagtataaaaataaaggcacgtatctactcagactagaagttcg |
316 |
Q |
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| T |
4671135 |
gcactctagaaacttcatttccaaaaggaccagacctgaaatcaaagccatatacacagtataaaaataaaggcacgtatctacttagactagaagttcg |
4671234 |
T |
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| Q |
317 |
gaagatgctataaaacaccaatacagagaataata |
351 |
Q |
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| T |
4671235 |
gaagatgctataaaacaccaatacagagaataata |
4671269 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 43260264 - 43260201
Alignment:
| Q |
192 |
aaacctggtacaagaccaccaccaagcactctagaaacttcatttccaaaaggaccagacctga |
255 |
Q |
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| T |
43260264 |
aaacctggcacaagaccaccgccaagcacaatagaaacttcatctccaaaagggccagacctga |
43260201 |
T |
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