View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16612_high_15 (Length: 295)

Name: NF16612_high_15
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16612_high_15
NF16612_high_15
[»] chr5 (7 HSPs)
chr5 (19-288)||(1481955-1482224)
chr5 (19-252)||(1477799-1478030)
chr5 (19-165)||(1504862-1505008)
chr5 (21-186)||(1492035-1492197)
chr5 (19-164)||(1509009-1509155)
chr5 (19-196)||(1486524-1486701)
chr5 (21-180)||(1499110-1499269)
[»] chr7 (6 HSPs)
chr7 (21-180)||(5314981-5315140)
chr7 (19-180)||(5310267-5310428)
chr7 (19-174)||(5302372-5302527)
chr7 (19-174)||(5284184-5284339)
chr7 (19-174)||(5289788-5289943)
chr7 (21-165)||(46707081-46707225)
[»] chr1 (3 HSPs)
chr1 (21-165)||(44128459-44128603)
chr1 (21-165)||(44132664-44132808)
chr1 (21-165)||(44141086-44141230)
[»] chr2 (1 HSPs)
chr2 (19-180)||(24163881-24164042)
[»] chr3 (2 HSPs)
chr3 (19-164)||(37859455-37859600)
chr3 (42-164)||(37863504-37863626)
[»] chr8 (1 HSPs)
chr8 (30-82)||(35250779-35250831)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 1482224 - 1481955
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1482224 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 1482125  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaatatcattagtagaacaattttcggatatcatcaaaatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1482124 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaatatcattagtagaacaattttcggatatcatcaaaatca 1482025  T
Q  219 atcaaataataataggtcttttaatgaaaataatatgtatcaatttggtaggcaaatttcatctcactgg 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1482024 atcaaataataataggtcttttaatgaaaataatatgtatcaatttggtaggcaaatttcatatcactgg 1481955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 1478030 - 1477799
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||    
T  1478030 ttcctagtctaggtacttctaccaccaccatgtcctgcctagcatccaatgacggtgccatgtattcacatacacttggattttctttcaaaatttcttc 1477931  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaatatcattagtagaa-caattttcggatatcatcaaaatc 217  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||  |||||||| || || |||| ||| || | ||||| |    
T  1477930 ggtaagatacatgtatctcctcttgatcatggatttatcacctgaagtagt--taaagaaattacattagtacaaccacttttgggaaat-accaaaacc 1477834  T
Q  218 aatcaaataataataggtcttttaatgaaaataat 252  Q
    ||||| || ||||| |||||||||||| |||||||    
T  1477833 aatcacatgataattggtcttttaatgcaaataat 1477799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 1505008 - 1504862
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| ||    
T  1505008 ttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactgggattctcttttaaaatctcctc 1504909  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaag 165  Q
     || || ||||||||||| ||||| ||||||||||||||||||||||    
T  1504908 tgttaggtacatgtatcttctcttaatcatagatttatcacctgaag 1504862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 1492197 - 1492035
Alignment:
Q  21 cctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcag 120  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||| ||||| |||||||| || |    
T  1492197 cctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtgccatgtattcacaaacattaggattctcttttaaaatctcctctg 1492098  T
Q  121 taagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaatatcatt 186  Q
    | |||||||||||||| || |||||||| ||||| ||||||||   ||||||||||||||| ||||    
T  1492097 ttagatacatgtatcttcttttgatcatggatttgtcacctga---agttataaagaaataacatt 1492035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 1509155 - 1509009
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||||||||||| |||||| | ||  | || ||| | ||||| |||||||||||||||||    
T  1509155 ttcctagcctaggtacctttacaaccaccatgtcttgcctagcatccaatgatggtgccgtataagcacaaacattgggattctctttcaaaatctcttc 1509056  T
Q  119 agtaagatacatgtatctcctctt-gatcatagatttatcacctgaa 164  Q
     |||| |||||||||||||||||| |||||| |||||||||||||||    
T  1509055 tgtaatatacatgtatctcctcttagatcatcgatttatcacctgaa 1509009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 1486701 - 1486524
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||| |||||||| |||  ||||||||||||||||||||||||||| ||||||| ||| ||   ||| | | ||||||| |||||||||||  ||||    
T  1486701 ttcctagcctaggcacgtctcgcaccaccatgtcttgcctagcatccaaagaaggtgtcatataagtgcaaaaattaggattctctttcaaaatagcttc 1486602  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaatatcattagtagaacaa 196  Q
     ||  | ||||||||||| ||||||||||| ||||| |||||| ||||| ||||||| || |  |||||||| |||||    
T  1486601 tgtttggtacatgtatcttctcttgatcattgatttttcacctaaagtaattataaataattgacattagtataacaa 1486524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 1499269 - 1499110
Alignment:
Q  21 cctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcag 120  Q
    ||||||||||| | ||||||| ||| ||||||||||||||||||||| ||||||| | | |    ||| | | | ||||| ||||||||||||||||| |    
T  1499269 cctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgaagcaaaaatttggattatctttcaaaatctcttctg 1499170  T
Q  121 taagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaat 180  Q
    | |  ||||  | |||| || | |||||||||||||||||| ||| ||||||||||||||    
T  1499169 ttaagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaat 1499110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 5315140 - 5314981
Alignment:
Q  21 cctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcag 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||| |    
T  5315140 cctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctg 5315041  T
Q  121 taagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaat 180  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5315040 ttagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataatgaaat 5314981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 5310428 - 5310267
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||    
T  5310428 ttcctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatgaaggtgccatgtattcacaaacactaggattttctttcaaaatctcctc 5310329  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaat 180  Q
     || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  5310328 tgttagatacatgtatctcctcttgatcatagatttatcacctgaagtggttataatgaaat 5310267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 5302527 - 5302372
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||    
T  5302527 ttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttc 5302428  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataa 174  Q
     || |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5302427 tgttagatacatgtatctcctcttgatcatggatttatcacctgaagtagttataa 5302372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 5284339 - 5284184
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||| ||||||||| |||||    
T  5284339 ttcctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatgaaggggccatgtattcacaaacactaggattttttttcaaaatttcttc 5284240  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataa 174  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5284239 tgttagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataa 5284184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 5289788 - 5289943
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||    
T  5289788 ttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggggccatgtattcacaaacacttggattttctttcaaaatttcttc 5289887  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataa 174  Q
     || |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5289888 tgttagatacatgtatctcctcttgatcatggatttatcacctgaagtagttataa 5289943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 46707081 - 46707225
Alignment:
Q  21 cctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcag 120  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| |||||||||||||| |  |    
T  46707081 cctagtctaggtacctctaccaccaccatgtcttgcctggcatccaatgaaggtgccatatattcacaaacactgggattctctttcaaaatctcctatg 46707180  T
Q  121 taagatacatgtatctcctcttgatcatagatttatcacctgaag 165  Q
    | || ||||||||||||||||||||||||||||||||||||||||    
T  46707181 ttaggtacatgtatctcctcttgatcatagatttatcacctgaag 46707225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 44128603 - 44128459
Alignment:
Q  21 cctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcag 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || |    
T  44128603 cctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctg 44128504  T
Q  121 taagatacatgtatctcctcttgatcatagatttatcacctgaag 165  Q
    | || ||||| ||||||||||||||||||||||||||||||||||    
T  44128503 ttaggtacatatatctcctcttgatcatagatttatcacctgaag 44128459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 44132808 - 44132664
Alignment:
Q  21 cctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcag 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || |    
T  44132808 cctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctg 44132709  T
Q  121 taagatacatgtatctcctcttgatcatagatttatcacctgaag 165  Q
    | || ||||| ||||||||||||||||||||||||||||||||||    
T  44132708 ttaggtacatatatctcctcttgatcatagatttatcacctgaag 44132664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 44141230 - 44141086
Alignment:
Q  21 cctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcag 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || |    
T  44141230 cctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctg 44141131  T
Q  121 taagatacatgtatctcctcttgatcatagatttatcacctgaag 165  Q
    | || ||||| ||||||||||||||||||||||||||||||||||    
T  44141130 ttaggtacatatatctcctcttgatcatagatttatcacctgaag 44141086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 24163881 - 24164042
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    |||||||||| ||  ||||||| ||||||||||||||||||| |||||| ||||||||||| ||   ||| |   ||||||| |||||||||||||||||    
T  24163881 ttcctagtcttggtgcctctactaccaccatgtcttgcctagtatccaaagaaggtgccatataagtgcacaagttaggattctctttcaaaatctcttc 24163980  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaat 180  Q
     || || ||||||||||||||||||||||||| |||||||||| || |||||||||||||||    
T  24163981 ggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaat 24164042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 37859455 - 37859600
Alignment:
Q  19 ttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttc 118  Q
    |||||||||| || ||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| |||||||  ||||||||    
T  37859455 ttcctagtcttggtacctccacaaccaccatgtcttgtcttgcatccaatgaaggtgccatgtactcgcatacacttggattctctttcaggatctcttc 37859554  T
Q  119 agtaagatacatgtatctcctcttgatcatagatttatcacctgaa 164  Q
     || |  |||||||||||| |||||||||| || ||||||||||||    
T  37859555 tgtcaagtacatgtatctcttcttgatcattgacttatcacctgaa 37859600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 37863504 - 37863626
Alignment:
Q  42 accaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcagtaagatacatgtatctcctct 141  Q
    |||||||| || || || |||||||| ||||||||||| || || |||| ||||||||| || ||||||||||||||||| | || |||||||||| |||    
T  37863504 accaccatatcctgtcttgcatccaacgaaggtgccatatactcacataaactaggattctccttcaaaatctcttcagtcaaatgcatgtatctcttct 37863603  T
Q  142 tgatcatagatttatcacctgaa 164  Q
    | |||||||||||||||||||||    
T  37863604 taatcatagatttatcacctgaa 37863626  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 35250831 - 35250779
Alignment:
Q  30 ggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgta 82  Q
    ||||||||||| |||||||| ||||| || ||||||||||| |||||||||||    
T  35250831 ggcacctctactaccaccatatcttgtcttgcatccaatgatggtgccatgta 35250779  T

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