View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_16 (Length: 291)
Name: NF16612_high_16
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 49938177 - 49937911
Alignment:
| Q |
11 |
cagagatttgtggatataatcaaaaacacaaatgtgatttgcatgagtgctaaatttcatgtatgttaatcaacaaaacaatacacagaatgtccaataa |
110 |
Q |
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| T |
49938177 |
cagaaatttgtggatataatcaaaaacacaaatgtgatatgcatgagtgctaaatttcatgtatgttaatcaacaaaacaatacacagaatgtccaataa |
49938078 |
T |
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| Q |
111 |
gaacaaacatttaagagctatggacttacttctggctctcaattataggtacacgtgcaaggacgaactcgcagaataactccaatatttcatatgcagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49938077 |
gaacaaacatttaagagctatggacttacttctggctctcaattataggtacacgtgcaaggacgaactcgcagaataactccaatatttcatatgcagc |
49937978 |
T |
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| Q |
211 |
ccatatattttgttctcgaatgatatgttccacctaattaaaacaacgcaattcacaaacatgtaat |
277 |
Q |
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| T |
49937977 |
ccatatattttgttctcgaatgatatgttccacctaattaaaacaacgcaattcacaaacatgtaat |
49937911 |
T |
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