View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_2 (Length: 507)
Name: NF16612_high_2
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 491
Target Start/End: Complemental strand, 21344226 - 21343753
Alignment:
| Q |
17 |
cacttaaaaaggaacacataacaattgagagcaactacaccaccatatagaaaccacacaagagttaaattaagactcattgaagaacctattttcctgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21344226 |
cacttaaaaaggaacacataacaattgagagcaactacaccaccatatagaaaccacacaagagttaaattaagactcattgaagaacctattttcctgc |
21344127 |
T |
|
| Q |
117 |
agcattaattctggtaacttaattttggcatttctttgagttaacacttaacaccaatctttttgttctgaaaattaatgaaggtgaattata-tctaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21344126 |
agcattaattctggtaacttaattttggcatttct--gagttaacacttaacaccaatctttttgttctgaaaattaatgaaggtgaattataatctaac |
21344029 |
T |
|
| Q |
216 |
gtgacatttattcaattaacataggaatgaattggcacgttggttccaccaaactgaagaaccacccagtaaaaactaaaaaccacattgcatgcacacc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21344028 |
gtgacatttattcaattaacataggaatgaattggcacggtggttccaccaaactgaagaaccacccagtaaaaactaaaaaccacattgcatgcacacc |
21343929 |
T |
|
| Q |
316 |
aaaactaactactaagctttatgaaattttagttagcatataaatataataactgcaagtacatgaaggatgaaaattggttaggaataaattaaaatct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21343928 |
aaaactaactactaagctttatgaaattttagttagcatataaatataataactgcaagtacatgaaggatgaaaattggttaggaataaattaaaatct |
21343829 |
T |
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| Q |
416 |
cactttgaggtaagcagtgaagtgatattgggcgctgtacaactacatccatttagattactgacttgttctgttc |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21343828 |
cactttgaggtaagcagtgaagtgatattgggcgctgtacaactacatccatttagataactgacttgttctgttc |
21343753 |
T |
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