View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_21 (Length: 242)
Name: NF16612_high_21
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 43473822 - 43474041
Alignment:
| Q |
10 |
aacaatatcattctcatctgtgccccgcgtccttcactttcaaataaattaagtgaattcaatggttggttgtaggaaaaatgaagttgagaggaagaat |
109 |
Q |
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| T |
43473822 |
aacaatattattctcatctgtgccccgcgtccttcactttcaaataaattaagtgaattcaatggttggtagtaggaaaaatgaagttgagaggaagaat |
43473921 |
T |
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| Q |
110 |
atctgccctaatctccaactccaggtagatgaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatcc |
209 |
Q |
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| T |
43473922 |
atctgccctaatctccaactccagatagatgaatatagaatgaagttacatgatttctctcttgaagaagaagagaaacaaaccgttttcaacttcatcg |
43474021 |
T |
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| Q |
210 |
ccttagactacaaaaatagg |
229 |
Q |
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|||||||||||||||||||| |
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| T |
43474022 |
ccttagactacaaaaatagg |
43474041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 43566400 - 43566206
Alignment:
| Q |
35 |
cgcgtccttcactttcaaataaattaagtgaattcaatggttggttgtaggaaaaatgaagttgagaggaagaatatctgccctaatctccaactccagg |
134 |
Q |
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|||| |||||||||||||| ||| | | ||||||||||||||| | ||| ||| ||| |||||||| |||||||||||||||| ||||||||| ||| |
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| T |
43566400 |
cgcgcccttcactttcaaacaaactcaatgaattcaatggttgatggtaagaagaataaagttgaggggaagaatatctgccccaatctccaatgtcaga |
43566301 |
T |
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| Q |
135 |
tagatgaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaatagg |
229 |
Q |
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| T |
43566300 |
tagatgaatacagaatgaagttaaatgatttctcccttgaagaacaagagaaacaaaccgtttccaaattcatcgccttagactacaaaaatagg |
43566206 |
T |
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