View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_3 (Length: 504)
Name: NF16612_high_3
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 34334369 - 34334883
Alignment:
| Q |
1 |
atctcaaatgattgaacataacacatttaaatgttttcaactcaacttgttggtttacaatggccaatggactttaagaagctcaacaaatttttgctct |
100 |
Q |
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| T |
34334369 |
atctcaaatgattgaacataacacatttaaatgttttcaactcaacttgttggtttacaatggccaatggactttaagaagctcaacaaatttttgctct |
34334468 |
T |
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| Q |
101 |
aataatataattcggaacaacttaaaatttatcttacagtgaagtcgcacagttaactaagcatttaaaccataaaattgtagcgatctaaacaactcag |
200 |
Q |
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| T |
34334469 |
aataatataattcggaacaacttaaaatttatcttacagttaagtcgcacaattaactaagcatttaaaccataaaattgtggccatctaaacaactcag |
34334568 |
T |
|
| Q |
201 |
ttggtaaatttctaaattatgataagtaatggttaaagtacacacttaatttctaaattatataaatgataataagtaatggttaaagtatacaaaacat |
300 |
Q |
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| T |
34334569 |
ttggtaaatttctaaattatgataagtaatggttaaagtacacacttaatttctaaattatataaat-ataataagtaatggttaaagtatacacaacat |
34334667 |
T |
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| Q |
301 |
gtcaatttagtta--gtta-----atgtta-----tttattaactgattttctcttacatcggggattaaattgacaaatttttatatttgtatagctag |
388 |
Q |
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| T |
34334668 |
gtcaatttagttaatgttattaagatgttagagactatattaactaattttctcatacattggggattaaattgacaaatttttatatttgtatagctag |
34334767 |
T |
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| Q |
389 |
ggactaaattaaagagggagataatttaatgaagaaattgatagttatttcaaattttaagtgtgcaagaaagtctttctttttcttgtttgtcacaagc |
488 |
Q |
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| T |
34334768 |
ggactaaattaaagagggagataatttaatgaagaaattgatagttatttcaaattttaagtgtgcaagaaagtctttctttttcttgtttgtcacaagc |
34334867 |
T |
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| Q |
489 |
ttgagcttccactcca |
504 |
Q |
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| T |
34334868 |
ttgagcttccactcca |
34334883 |
T |
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