View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_6 (Length: 423)
Name: NF16612_high_6
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 42206290 - 42205908
Alignment:
| Q |
1 |
catcctagagactagtcatacaccatacttgtatnnnnnnnggataatcaagcatcacatgatctagatcagagaaatatgttataatggatatgatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42206290 |
catcctagagactagtcatacaccatacttgtataaaaaaaggataatcaaacatcacatgatctagatcagagaaatgtgttataatggatatgatttt |
42206191 |
T |
|
| Q |
101 |
taaattggctatccttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtttttgccgtaaaacaattttatttactttaacaccgaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |
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| T |
42206190 |
taaattggctatc-ttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtctt-gccgtaaaacaattttatttactttaacaccgga |
42206093 |
T |
|
| Q |
201 |
ttttacg-----------gtagtagtggtgtgatattgccatttcaacttatcgtgatggttcgtgaaagtccctttcgctgtactttttgaaaggaata |
289 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42206092 |
ttttacgaaatcatcccggtagtagtggtgtgatattgccatttcaacttatcgttatggttcgtgaaagtccctttcgctgtactttttgaaaggaata |
42205993 |
T |
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| Q |
290 |
acgtggattattttttactagaatatatcggtaaaacctaattcatcactataaattaaatagggtttagagtgcttatcgaaag |
374 |
Q |
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| T |
42205992 |
acgtggattattttttactagaatatatcggtaaaacctaattcatcactataaattaaatagggtttagagtgcttatcgaaag |
42205908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 42215158 - 42214776
Alignment:
| Q |
1 |
catcctagagactagtcatacaccatacttgtatnnnnnnnggataatcaagcatcacatgatctagatcagagaaatatgttataatggatatgatttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42215158 |
catcctagagactagtcatacaccatacttgtataaaaaaaggataatcaaacatcacatgatctagatcagagaaatgtgttataatggatatgatttt |
42215059 |
T |
|
| Q |
101 |
taaattggctatccttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtttttgccgtaaaacaattttatttactttaacaccgaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |
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| T |
42215058 |
taaattggctatc-ttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtctt-gccgtaaaacaattttatttactttaacaccgga |
42214961 |
T |
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| Q |
201 |
ttttacg-----------gtagtagtggtgtgatattgccatttcaacttatcgtgatggttcgtgaaagtccctttcgctgtactttttgaaaggaata |
289 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214960 |
ttttacgaaatcatcccggtagtagtggtgtgatattgccatttcaacttatcgttatggttcgtgaaagtccctttcgctgtactttttgaaaggaata |
42214861 |
T |
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| Q |
290 |
acgtggattattttttactagaatatatcggtaaaacctaattcatcactataaattaaatagggtttagagtgcttatcgaaag |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214860 |
acgtggattattttttactagaatatatcggtaaaacctaattcatcactataaattaaatagggtttagagtgcttatcgaaag |
42214776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 42205892 - 42205857
Alignment:
| Q |
388 |
ggtttagagaattgacagagaagaaaaggtacgtcg |
423 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
42205892 |
ggtttagagaattgacaaagaagaaaaggtacgtcg |
42205857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 42214760 - 42214725
Alignment:
| Q |
388 |
ggtttagagaattgacagagaagaaaaggtacgtcg |
423 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
42214760 |
ggtttagagaattgacaaagaagaaaaggtacgtcg |
42214725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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