View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_7 (Length: 386)
Name: NF16612_high_7
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 96 - 370
Target Start/End: Complemental strand, 35340190 - 35339916
Alignment:
| Q |
96 |
gacacatccacaatatcagcccatagtgccgatgaaatagaaaggaggggctcctacaacacaatgagactaagctattagctcctattttcgtcaatat |
195 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35340190 |
gacacatccacaatatcagcccatactgccgatgaaatagaaaggaggggctcctacaacacaatgagactaagctattagctcctattttcgtcaagat |
35340091 |
T |
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| Q |
196 |
atccgcacaaacatttcattcttggagagtatgatgatgaactatgaagatcaaatattttttcatgtacttgttcaannnnnnnnnnnnnnnnnnnnnc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35340090 |
atccgcacaaacatttcattcttggagagtatgatgatgaactatgaagatcaaatattttttcatgtacttgttcaattttttttttctttttcttttc |
35339991 |
T |
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| Q |
296 |
atgttaatgtaatctcttataatcatcaacaaatatgaaaattattattactcatggtaacaacatggagagaga |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35339990 |
atgttaatgtaatctcttataatcatcaacaaatatgaaaattattattactcatggtaacaacatagagagaga |
35339916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 13579410 - 13579359
Alignment:
| Q |
96 |
gacacatccacaatatcagcccatagtgccgatgaaatagaaaggaggggct |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13579410 |
gacacatccacaatatcagcccatagtgccgatgaaatagaaaggaggggct |
13579359 |
T |
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