View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_high_8 (Length: 374)
Name: NF16612_high_8
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 53029781 - 53029436
Alignment:
| Q |
10 |
ataatactgagaatgaagagataattgagtgtttgaagaaagatgttggtgttgttgatttagatagtgaagtttcttcacttcctgattggatatcaat |
109 |
Q |
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| T |
53029781 |
ataataatgagattgaagggataattgagtgtttgaagaaagatgttggtgttgttgatttagatagtgaagtttcttcacttcctgattggatatcaat |
53029682 |
T |
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| Q |
110 |
caaagcaattctcacaacttggcttcatgatgcacttacatatgaactttgggttggatctgatggttcttctgctaatagtatctattattctgatctt |
209 |
Q |
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| T |
53029681 |
caaagcaattctcacaacttggcttcatgatgcacttacatatgaactttgggttggatctgatggttcttctgctaatagtatctattattctgatctt |
53029582 |
T |
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| Q |
210 |
ccttggcccttagggaagattctctattcgcataaagtgcgttgggtgaaactgaagcatgggattactgatgacaatgctgtagtcaagaaagaagagg |
309 |
Q |
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| T |
53029581 |
ccttggcccttagggaagattctctattcgcataaagtgcgttgggtgaaactgaagcatgggattactgatgacaatgctgtagtcaagaaagaagagg |
53029482 |
T |
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| Q |
310 |
tcagtttttcactttttcttctaactaccttaattactctaatttc |
355 |
Q |
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| T |
53029481 |
tcagtttttcactttttcttctaactaccttaattactctaatttc |
53029436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 217
Target Start/End: Original strand, 16014272 - 16014424
Alignment:
| Q |
65 |
tgatttagatagtgaagtttcttcacttcctgattggatatcaatcaaagcaattctcacaacttggcttcatgatgcacttacatatgaactttgggtt |
164 |
Q |
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| T |
16014272 |
tgatttagatactggtgtatcttcactccctgaatggataccaaccaaggtgatgctcacaacttggcttgctgatgcacttgagtacgaactttgggtg |
16014371 |
T |
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| Q |
165 |
ggatctgatggttcttctgctaatagtatctattattctgatcttccttggcc |
217 |
Q |
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| T |
16014372 |
ggaagtgacccttcatctgcttatagcatctattattctgatcttccatggcc |
16014424 |
T |
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