View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16612_low_16 (Length: 309)

Name: NF16612_low_16
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16612_low_16
NF16612_low_16
[»] chr7 (24 HSPs)
chr7 (11-292)||(33036011-33036291)
chr7 (29-232)||(38892096-38892297)
chr7 (24-232)||(27571543-27571750)
chr7 (24-232)||(23333245-23333453)
chr7 (27-229)||(27098832-27099031)
chr7 (27-229)||(27179272-27179471)
chr7 (82-164)||(45809973-45810055)
chr7 (84-144)||(5437147-5437207)
chr7 (82-159)||(48609439-48609516)
chr7 (82-164)||(758571-758653)
chr7 (188-232)||(31174575-31174619)
chr7 (84-164)||(41532411-41532491)
chr7 (82-164)||(83951-84033)
chr7 (97-159)||(2410956-2411018)
chr7 (82-164)||(46212010-46212092)
chr7 (84-132)||(11468632-11468680)
chr7 (83-143)||(19532346-19532406)
chr7 (97-159)||(36558352-36558414)
chr7 (82-159)||(2826752-2826829)
chr7 (23-60)||(5481252-5481289)
chr7 (106-159)||(33335982-33336035)
chr7 (23-60)||(41533088-41533125)
chr7 (24-60)||(303922-303958)
chr7 (84-156)||(37205782-37205853)
[»] chr4 (22 HSPs)
chr4 (26-231)||(18501935-18502133)
chr4 (28-232)||(27512854-27513058)
chr4 (24-232)||(39606238-39606446)
chr4 (24-229)||(23237458-23237663)
chr4 (23-232)||(32595038-32595246)
chr4 (23-232)||(4608056-4608264)
chr4 (23-232)||(54508509-54508717)
chr4 (24-232)||(22375837-22376045)
chr4 (24-159)||(18493732-18493868)
chr4 (25-159)||(34021248-34021383)
chr4 (82-179)||(20167494-20167591)
chr4 (82-170)||(43892856-43892944)
chr4 (82-164)||(13768528-13768610)
chr4 (90-164)||(44222953-44223027)
chr4 (80-146)||(21733898-21733964)
chr4 (119-164)||(37927782-37927827)
chr4 (86-179)||(46721854-46721947)
chr4 (82-174)||(20618746-20618838)
chr4 (109-175)||(23609296-23609362)
chr4 (82-164)||(32824599-32824681)
chr4 (188-232)||(18493898-18493942)
chr4 (84-164)||(30226657-30226737)
[»] chr2 (14 HSPs)
chr2 (22-234)||(2096032-2096244)
chr2 (82-164)||(41732610-41732692)
chr2 (83-164)||(1043328-1043409)
chr2 (83-164)||(9190317-9190398)
chr2 (82-159)||(1593064-1593141)
chr2 (84-164)||(21613363-21613443)
chr2 (82-177)||(36314547-36314643)
chr2 (112-176)||(9754027-9754091)
chr2 (82-142)||(21278634-21278694)
chr2 (86-157)||(10585107-10585178)
chr2 (106-164)||(14160589-14160647)
chr2 (23-60)||(1043248-1043285)
chr2 (23-60)||(21612729-21612766)
chr2 (136-176)||(12563841-12563881)
[»] chr5 (13 HSPs)
chr5 (23-232)||(39570764-39570972)
chr5 (27-232)||(12947237-12947444)
chr5 (27-203)||(12933025-12933202)
chr5 (89-231)||(6735844-6735986)
chr5 (127-225)||(42092340-42092437)
chr5 (82-164)||(17769310-17769392)
chr5 (25-131)||(42091883-42091989)
chr5 (84-164)||(21360904-21360984)
chr5 (82-159)||(13517248-13517324)
chr5 (82-164)||(39685662-39685745)
chr5 (82-141)||(42580455-42580514)
chr5 (23-60)||(21361581-21361618)
chr5 (23-60)||(39684408-39684445)
[»] chr1 (17 HSPs)
chr1 (28-232)||(44592518-44592723)
chr1 (27-232)||(27773485-27773690)
chr1 (35-231)||(36156905-36157100)
chr1 (24-159)||(43022554-43022689)
chr1 (23-232)||(50303873-50304083)
chr1 (24-232)||(50099538-50099746)
chr1 (35-180)||(43410921-43411067)
chr1 (24-229)||(26632930-26633135)
chr1 (82-164)||(10619793-10619875)
chr1 (84-144)||(29681098-29681158)
chr1 (82-164)||(7493397-7493479)
chr1 (83-164)||(44429812-44429893)
chr1 (144-232)||(43022452-43022539)
chr1 (97-159)||(39618450-39618512)
chr1 (84-144)||(48366676-48366736)
chr1 (82-173)||(6764477-6764568)
chr1 (82-164)||(15757406-15757488)
[»] chr3 (13 HSPs)
chr3 (24-232)||(37057456-37057664)
chr3 (24-232)||(22775201-22775410)
chr3 (28-172)||(37224382-37224526)
chr3 (24-159)||(26769761-26769897)
chr3 (82-164)||(46823534-46823616)
chr3 (82-159)||(17653321-17653398)
chr3 (97-159)||(30500936-30500998)
chr3 (97-159)||(35238723-35238785)
chr3 (83-174)||(15871337-15871428)
chr3 (82-164)||(35734411-35734493)
chr3 (188-224)||(37224332-37224368)
chr3 (84-132)||(52724636-52724684)
chr3 (22-58)||(52725283-52725319)
[»] chr6 (8 HSPs)
chr6 (25-231)||(7590437-7590643)
chr6 (82-177)||(3886127-3886222)
chr6 (82-177)||(583292-583387)
chr6 (82-164)||(13703074-13703156)
chr6 (82-159)||(34729510-34729587)
chr6 (82-164)||(29363878-29363960)
chr6 (80-154)||(5122286-5122360)
chr6 (82-164)||(30386795-30386877)
[»] chr8 (9 HSPs)
chr8 (30-234)||(33538307-33538511)
chr8 (82-177)||(18606005-18606100)
chr8 (82-164)||(21441927-21442009)
chr8 (82-164)||(4072561-4072643)
chr8 (82-164)||(41323515-41323597)
chr8 (84-159)||(10713856-10713931)
chr8 (80-176)||(7559082-7559178)
chr8 (94-159)||(30932150-30932215)
chr8 (20-60)||(10718585-10718625)
[»] scaffold0049 (3 HSPs)
scaffold0049 (82-177)||(46861-46956)
scaffold0049 (82-164)||(15002-15084)
scaffold0049 (24-60)||(15812-15848)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 33036011 - 33036291
Alignment:
Q  11 cacagaggacgctcagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaactt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33036011 cacagaggacgctcagcggcgaaactagcaataattttatgaggtggccatccaaaactaatgaaattcacaaaaaattattacacctaaaatcgaactt 33036110  T
Q  111 ggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctaccccttt 210  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  33036111 ggggtagccaaatatatattatcaggggtagttaaacataaaaatatacatactgactcaataaaatttattttttt-gggtagccatagctaccccttt 33036209  T
Q  211 gttgtacaagcattcgcccctgaggacgctaatgttcttgtgtgaataaatggagtgtgccttagagtatgaagtgtaatct 292  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33036210 gttgtacaagcattcgcccctaaggacgctaatgttcttgtgtgaataaatggagtgtgccttagagtatgaagtgtaatct 33036291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 38892096 - 38892297
Alignment:
Q  29 gcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatatata 128  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  38892096 gcgaagctagcaataattttatgaggtggtcatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtaatcaaatatata 38892195  T
Q  129 ttatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcgcc 228  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  38892196 ttatca-gggtagctaaacataaaaatatacctactgactcaataaaatttattttttt-gggtagccatagctacccctttgttgtacaagcattcgcc 38892293  T
Q  229 cctg 232  Q
    ||||    
T  38892294 cctg 38892297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 27571543 - 27571750
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 123  Q
    |||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||    
T  27571543 cagcggcgaagctagcaataattttatgaggtggccaccctaaagtaaccaaagtcacaaaaaattattacacctaaaatcgaacatagggtagccaaat 27571642  T
Q  124 atatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcat 223  Q
    ||||||||| | |||||||||||||||||||||||| |||| |||| || || |||        ||||||||||||||||||||||||||||||||||||    
T  27571643 atatattattaggggtagctaaacataaaaatatacctactaactc-attaattttttttttttggggtagccatagctacccctttgttgtacaagcat 27571741  T
Q  224 tcgcccctg 232  Q
    |||||||||    
T  27571742 tcgcccctg 27571750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 23333245 - 23333453
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 123  Q
    |||||||||| |||||||||||||||||||||||||| || ||| |||| ||| | | ||||||||||| ||||||||||||||||||| ||||||||||    
T  23333245 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagttataaaaaattattgcacctaaaatcgaacttggagtagccaaat 23333344  T
Q  124 atatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcat 223  Q
    ||||||||| | |||||||||||||||||||||||| |||| |||||||||||||||       ||||| ||||||||||||||| |  |||||||||||    
T  23333345 atatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggggtggccatagctacccctctcctgtacaagcat 23333444  T
Q  224 tcgcccctg 232  Q
    |||||||||    
T  23333445 tcgcccctg 23333453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 27098832 - 27099031
Alignment:
Q  27 cggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatata 126  Q
    ||||||| ||| |||||||||||||||||||||| || ||| |||  ||| ||||||||||||||||||  ||||||  || ||||| ||||||||||||    
T  27098832 cggcgaagctaacaataattttatgaggtggccaccccaaagtaatcaaagtcacaaaaaattattacatttaaaattaaatttgggatagccaaatata 27098931  T
Q  127 tattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcg 226  Q
    |||||| | ||||||||||||||||| ||| || |||| |||||||||  |||         ||||||||||||||||||||||||||||||||||||||    
T  27098932 tattattaggggtagctaaacataaatataaacctactaactcaataattttt---ttttttgggtagccatagctacccctttgttgtacaagcattcg 27099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 27179471 - 27179272
Alignment:
Q  27 cggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatata 126  Q
    ||||||| ||| |||||||||||||||||||||| || ||| |||  ||| ||||||||||||||||||  ||||||  || ||||| ||||||||||||    
T  27179471 cggcgaagctaacaataattttatgaggtggccaccccaaagtaatcaaagtcacaaaaaattattacatttaaaattaaatttgggatagccaaatata 27179372  T
Q  127 tattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcg 226  Q
    |||||| | ||||||||||||||||| ||| || |||| |||||||||  |||         ||||||||||||||||||||||||||||||||||||||    
T  27179371 tattattaggggtagctaaacataaatataaacctactaactcaataattttt---ttttttgggtagccatagctacccctttgttgtacaagcattcg 27179275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 45809973 - 45810055
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||||||   ||||||||||| |||||||||||| ||||    
T  45809973 aaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattgggggtagctaaatataaaaatatacctact 45810055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 5437147 - 5437207
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagcta 144  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  5437147 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagcta 5437207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 48609439 - 48609516
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||| ||| ||||||  ||||||||||||| ||||||||||||| | |||||| |||| ||||||||||||    
T  48609439 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatac 48609516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 758653 - 758571
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  || |||||||||| ||||||||||||| | |||||| |||| |||||||||||| ||||    
T  758653 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaagggtagataaatataaaaatatacctact 758571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 31174575 - 31174619
Alignment:
Q  188 ggggtagccatagctacccctttgttgtacaagcattcgcccctg 232  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  31174575 ggggtagccatagctacccctttgtcatacaagcattcgcccctg 31174619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 41532491 - 41532411
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||  | ||||| |||||| ||||||||||||||||||||||| | ||||||| ||| |||| ||||||| ||||    
T  41532491 aaaattatttaaactaaagtcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctact 41532411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 83951 - 84033
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||| ||||| ||| ||||||  || |||||||| | ||||||||||||| | ||||||||||| |||||||||||| ||||    
T  83951 aaaaatttatttcacttaaaattaaatttggggtaactaaatatatattattaggggtagctaaatataaaaatatacctact 84033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 2411018 - 2410956
Alignment:
Q  97 ctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    |||||||| || |||| ||||||||||||||||||| | |||||||| || ||||||||||||    
T  2411018 ctaaaatcaaatttggagtagccaaatatatattattaggggtagcttaatataaaaatatac 2410956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 46212010 - 46212092
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  || |||||||||| ||||||||||||| |   ||||||||| |||||||||||| ||||    
T  46212010 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattagaagtagctaaatataaaaatatacctact 46212092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 11468680 - 11468632
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattat 132  Q
    ||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  11468680 aaaattatttcaactaaaatcaaacttgaggtagccaaatatatattat 11468632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 19532346 - 19532406
Alignment:
Q  83 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagct 143  Q
    |||| ||||| || |||||||| || |||||||||||||||||||||||| | ||||||||    
T  19532346 aaaacttattccatctaaaatcaaatttggggtagccaaatatatattattaagggtagct 19532406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 36558414 - 36558352
Alignment:
Q  97 ctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    |||||||| |||||| |||||||||||||||||||| | |||||  | || ||||||||||||    
T  36558414 ctaaaatcaaacttgaggtagccaaatatatattattaggggtaatttaatataaaaatatac 36558352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 2826829 - 2826752
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||| ||| || |||  ||||||| ||||| ||||||||||||| |  | |||||||| ||||||||||||    
T  2826829 aaaaaattatttcacttacaattaaacttggagtagctaaatatatattattagagatagctaaatataaaaatatac 2826752  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 5481289 - 5481252
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggcca 60  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  5481289 tcagcggcgaagctagcaatatttttatgaggtggcca 5481252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 33335982 - 33336035
Alignment:
Q  106 aacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||||  ||||||||||||| | ||||||||||| ||||| ||||||    
T  33335982 aacttggggtagttaaatatatattattaggggtagctaaatataaatatatac 33336035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 41533125 - 41533088
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggcca 60  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  41533125 tcagcggcgaagctagcaatatttttatgaggtggcca 41533088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 303922 - 303958
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggcca 60  Q
    |||||||||| |||||||||||| |||||||||||||    
T  303922 cagcggcgaagctagcaataattctatgaggtggcca 303958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 37205782 - 37205853
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaata 156  Q
    |||| |||| || |||||||| |||||||| |||||||||||||||||| | || ||||| || |||||||||    
T  37205782 aaaagtattccatctaaaatcaaacttggg-tagccaaatatatattataagggatagcttaatataaaaata 37205853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 18502133 - 18501935
Alignment:
Q  26 gcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatat 125  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18502133 gcggcgaagctagcaataattttatgaggtggccacccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttagggtagccaaatat 18502034  T
Q  126 atattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattc 225  Q
    ||||||||| |||||| ||||||||       |  ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  18502033 atattatcaggggtagttaaacata-------atctactgactcaataaaatttatttttttggggtagccatagctacccctttgttgtacaagcattc 18501941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 27513058 - 27512854
Alignment:
Q  28 ggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatatat 127  Q
    |||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27513058 ggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattattacacctaaaatcgaacttggggtagccaaatatat 27512959  T
Q  128 attatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcgc 227  Q
    ||||| | |||||||||||||||||||||||| |||| |||||||||||||||       ||||||||||||||||||||| | ||||||||||||| ||    
T  27512958 attattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggggtagccatagctacccctctcttgtacaagcattggc 27512859  T
Q  228 ccctg 232  Q
    |||||    
T  27512858 ccctg 27512854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 39606238 - 39606446
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 123  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| ||| ||||||||||| |||||||||||||||||| |||||||||||    
T  39606238 cagcggcgaagctagcaataattttatgaggtggccatccgaaagtaaccaaagtcataaaaaattattgcacctaaaatcgaacttgaggtagccaaat 39606337  T
Q  124 atatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcat 223  Q
    ||||||||| | |||||||||||||||||||||||| |||| |||||||||||||||       || |||||||||||||||||| |  |||||||||||    
T  39606338 atatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggagtagccatagctacccctctcctgtacaagcat 39606437  T
Q  224 tcgcccctg 232  Q
    |||||||||    
T  39606438 tcgcccctg 39606446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 23237458 - 23237663
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 123  Q
    |||||||||| |||||||||||||||||||||||||| |||||| |||| ||| ||| |||||||||||||| |||||||||||||||||| ||||||||    
T  23237458 cagcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaaattattacatctaaaatcgaacttggggcagccaaat 23237557  T
Q  124 atatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcat 223  Q
    ||||||||| | |||||||||||||||||||||||| |||  | |||||||||||||       ||||||||||||||||||||| | ||||||||||||    
T  23237558 atatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttatttttttggggtagccatagctacccctctcttgtacaagcat 23237657  T
Q  224 tcgccc 229  Q
    ||||||    
T  23237658 tcgccc 23237663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 32595038 - 32595246
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaa 122  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||  ||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  32595038 tcagcggcgaagctagcaataattttttgaggtggccatccgaaagaaaccaaagtcataaaaaattattgcacctaaaatcgaacttggggtagccaaa 32595137  T
Q  123 tatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagca 222  Q
    |||||||||| | |||||||||||||||||||||||| |||| |||||||||||||||       |||||||||||||||| |||| |  |||| |||||    
T  32595138 tatatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggggtagccatagcta-ccctctcctgtagaagca 32595236  T
Q  223 ttcgcccctg 232  Q
    ||||||||||    
T  32595237 ttcgcccctg 32595246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 4608264 - 4608056
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaa 122  Q
    ||||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| ||||||| |||||| ||||||||||||||| ||||||||||    
T  4608264 tcagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaatgattacatctaaaatcgaacttgaggtagccaaa 4608165  T
Q  123 tatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagca 222  Q
    |||||||||| | |||||||||||||||||||||||| |||  | |||||||||||||        |||||||||||||||||||| | || ||||||||    
T  4608164 tatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttattttttt-gggtagccatagctacccctctcttatacaagca 4608066  T
Q  223 ttcgcccctg 232  Q
    ||||||||||    
T  4608065 ttcgcccctg 4608056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 54508509 - 54508717
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaatt-attacacctaaaatcgaacttggggtagccaa 121  Q
    ||||||||||| |||||||||||||||||||||||||| || ||| |||  ||| ||| |||||| | | |||| |||||||||||| ||||||||||||    
T  54508509 tcagcggcgaagctagcaataattttatgaggtggccacccgaaagtaatcaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaa 54508608  T
Q  122 atatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagc 221  Q
    ||||||||||| | |||||||||||||||||||||||| |||  | ||||||||||||         |||||||||||||||||||| | ||  ||||||    
T  54508609 atatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaattt--ttttttcgggtagccatagctacccctctctttaacaagc 54508706  T
Q  222 attcgcccctg 232  Q
    |||||||||||    
T  54508707 attcgcccctg 54508717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 22375837 - 22376045
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaatt-attacacctaaaatcgaacttggggtagccaaa 122  Q
    |||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| |||||| | | |||| |||||||||||| |||||||||||||    
T  22375837 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaaa 22375936  T
Q  123 tatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagca 222  Q
    |||||||||| | |||||||||||||||||||||||| |||  | ||||| || |||        ||||||||||||||||||||| | ||  |||||||    
T  22375937 tatatattattaggggtagctaaacataaaaatatacctacaaattcaat-aattttttttttttggggtagccatagctacccctctctttaacaagca 22376035  T
Q  223 ttcgcccctg 232  Q
    ||||||||||    
T  22376036 ttcgcccctg 22376045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 18493732 - 18493868
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaatt-attacacctaaaatcgaacttggggtagccaaa 122  Q
    |||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| |||||| | | |||| |||||||||||| |||||||||||||    
T  18493732 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaaa 18493831  T
Q  123 tatatattatcatgggtagctaaacataaaaatatac 159  Q
    |||||||||| | ||||||||||||||||||||||||    
T  18493832 tatatattattaggggtagctaaacataaaaatatac 18493868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 34021248 - 34021383
Alignment:
Q  25 agcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaatt-attacacctaaaatcgaacttggggtagccaaat 123  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||| ||| ||| |||||| | | |||| |||||||||||| ||||||||||||||    
T  34021248 agcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaaat 34021347  T
Q  124 atatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||| ||| | ||||||||||||||||||||||||    
T  34021348 atatactattaggggtagctaaacataaaaatatac 34021383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 20167591 - 20167494
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaattt 179  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||| ||  ||||||| || |||||||||||| |||| | ||||||| ||||    
T  20167591 aaaaaattattctacctaaaatcaaacttggggtagccaaatatatattaccagaggtagcttaatataaaaatatacttactcattcaataatattt 20167494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 43892856 - 43892944
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactca 170  Q
    ||||||||||| || |||||||  ||||||||| ||| ||||||||||||| | ||||||||||| ||||||||||||||||| |||||    
T  43892856 aaaaaattatttcatctaaaattaaacttggggcagctaaatatatattattaggggtagctaaatataaaaatatacatactcactca 43892944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 13768610 - 13768528
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  ||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||    
T  13768610 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctact 13768528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 44222953 - 44223027
Alignment:
Q  90 attacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||| |||||||||||||||||||| | ||||||||||||||| | |||||| ||||||||||||||||| ||||    
T  44222953 attatacctaaaatcgaacttggggcaaccaaatatatattattaggggtagttaaacataaaaatatacctact 44223027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 21733964 - 21733898
Alignment:
Q  80 acaaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaa 146  Q
    ||||||| ||||| ||||||||||| |||||||||||||||| |||||||||| | |||||||||||    
T  21733964 acaaaaagttattccacctaaaatcaaacttggggtagccaactatatattattaggggtagctaaa 21733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 37927827 - 37927782
Alignment:
Q  119 caaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||    
T  37927827 caaatatatattattatgggtagctaaatataaaaatatacatact 37927782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 46721947 - 46721854
Alignment:
Q  86 aattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaattt 179  Q
    ||||||| ||| ||||||  || |||||||||| ||||||||||||| | ||||||||||| |||||||||| | ||||  ||||| |||||||    
T  46721947 aattatttcacttaaaataaaatttggggtagctaaatatatattattaggggtagctaaaaataaaaatatccctactcgctcaaaaaaattt 46721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 20618838 - 20618746
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataa 174  Q
    |||||||||||  | |||||||  || |||||||||||||| ||||||||| | |||||||| || | |||||||||| |||| | |||||||    
T  20618838 aaaaaattattctatctaaaattaaatttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacctactcattcaataa 20618746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 23609296 - 23609362
Alignment:
Q  109 ttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaa 175  Q
    ||||| |||||||||||||||||| | || |||| ||| ||||||||||||||| | | ||||||||    
T  23609296 ttgggatagccaaatatatattattagggatagcaaaatataaaaatatacatattcattcaataaa 23609362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 32824599 - 32824681
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  || ||||| ||||||||||| |||||  | |||||| |||| |||||||||||| ||||    
T  32824599 aaaaaattatttcacttaaaataaaatttgggatagccaaatatttattactaggggtagttaaatataaaaatatacctact 32824681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 18493898 - 18493942
Alignment:
Q  188 ggggtagccatagctacccctttgttgtacaagcattcgcccctg 232  Q
    ||||||||||||||||||||| | ||  |||||||||||||||||    
T  18493898 ggggtagccatagctacccctctctttaacaagcattcgcccctg 18493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 30226657 - 30226737
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||  | ||||| |||||| ||||||| ||||||||||||||| | | ||||| ||| |||| ||||||| ||||    
T  30226657 aaaattatttaaactaaagtcgaacatggggtaaccaaatatatattattaggagtagccaaatataataatatacctact 30226737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 2096244 - 2096032
Alignment:
Q  22 ctcagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaa 121  Q
    |||||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| |||||||||| |||||||||||||||||||||||||||||    
T  2096244 ctcagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaa 2096145  T
Q  122 atatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagc 221  Q
    ||||||||||| | |||||||||||||||||||||||| |||  | |||||||||||||       ||||||||||||||||||||| | ||||||||||    
T  2096144 atatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttatttttttggggtagccatagctacccctctcttgtacaagc 2096045  T
Q  222 attcgcccctgag 234  Q
    |||||||||||||    
T  2096044 attcgcccctgag 2096032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 41732610 - 41732692
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||| | ||||||||| | ||||||| |||| ||||    
T  41732610 aaaaaattatttcaactaaaatctaacttggggtagccaaatatatattattaggggtagctacatataaaaacatacctact 41732692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 1043328 - 1043409
Alignment:
Q  83 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||| ||| ||||||  ||||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||    
T  1043328 aaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaatataaaaatatacctact 1043409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 9190317 - 9190398
Alignment:
Q  83 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||| ||| ||||||  ||||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||    
T  9190317 aaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaatataaaaatatacctact 9190398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 1593064 - 1593141
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||| ||  ||||||  ||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||    
T  1593064 aaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtaactaaatataaaaatatac 1593141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 21613363 - 21613443
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||  | ||||| |||||| ||||||||||||||||||||||| | ||||||| ||| |||| ||||||| ||||    
T  21613363 aaaattatttaaactaaagtcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctact 21613443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 36314547 - 36314643
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttgggg-tagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaat 177  Q
    ||||||||||| ||  ||||||  ||||||||| |||||||||||||||||| | ||||| ||||| |||||||||||| ||||  ||||| |||||    
T  36314547 aaaaaattatttcatttaaaataaaacttgggggtagccaaatatatattattaggggtaactaaatataaaaatatacctactcgctcaaaaaaat 36314643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 9754091 - 9754027
Alignment:
Q  112 gggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaa 176  Q
    |||||||||| |||||||||| |  |||||||||| |||||||||||| |||| | |||||||||    
T  9754091 gggtagccaattatatattattaacggtagctaaatataaaaatatacctacttaatcaataaaa 9754027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 21278694 - 21278634
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagc 142  Q
    ||||||||||| || |||||||| |||||||||||| |||||| ||||||| | |||||||    
T  21278694 aaaaaattatttcaactaaaatcaaacttggggtagtcaaataaatattattaggggtagc 21278634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 10585178 - 10585107
Alignment:
Q  86 aattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatat 157  Q
    ||||||| ||| ||||||  || ||||| |||| ||||||||||||| | ||||||||||| ||||||||||    
T  10585178 aattatttcacttaaaataaaatttgggatagctaaatatatattattaggggtagctaaaaataaaaatat 10585107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 14160589 - 14160647
Alignment:
Q  106 aacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||||||||| |||||||||| | ||||||||||  ||| |||||||| ||||    
T  14160589 aacttggggtagccaactatatattattaggggtagctaagtatacaaatatacctact 14160647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 1043248 - 1043285
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggcca 60  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  1043248 tcagcggcgaagctagcaataattctatgaggtggcca 1043285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 21612729 - 21612766
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggcca 60  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  21612729 tcagcggcgaagctagcaatatttttatgaggtggcca 21612766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 12563841 - 12563881
Alignment:
Q  136 gggtagctaaacataaaaatatacatactgactcaataaaa 176  Q
    |||||||||||||||||||||||| |||| |||||| ||||    
T  12563841 gggtagctaaacataaaaatatacctactcactcaaaaaaa 12563881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 39570972 - 39570764
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaa 122  Q
    |||| |||||| |||||||||||||||||| |||||||||| ||| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  39570972 tcagtggcgaagctagcaataattttatgacgtggccatccgaaagtaacaaaagtcataaaaaattattacacctaaaatcgaacttggggtagccaaa 39570873  T
Q  123 tatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagca 222  Q
    |||||||||| | |||||||||||||||||||||||| |||| ||||||| || |||        ||||||||||||||||||||| | |||||||||||    
T  39570872 tatatattattaggggtagctaaacataaaaatatacctactaactcaat-aattttttttttttggggtagccatagctacccctctcttgtacaagca 39570774  T
Q  223 ttcgcccctg 232  Q
    ||||||||||    
T  39570773 ttcgcccctg 39570764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 12947237 - 12947444
Alignment:
Q  27 cggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaa-aattattacacctaaaatcgaacttggggtagccaaatat 125  Q
    ||||||| ||| |||||||||||||||||||||| || ||| |||| ||| ||| |||| |||||||||||  |||||||||||||||||||| ||||||    
T  12947237 cggcgaagctaacaataattttatgaggtggccacccgaaaataactaaagtcataaaaaaattattacacaaaaaatcgaacttggggtagcaaaatat 12947336  T
Q  126 atattatcatgggtagctaaacat-aaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcatt 224  Q
    ||||||| |  ||||||||||||| |||||||||| |||| |||||||||||||||       |||||||||||||||| |||| | ||||| |||||||    
T  12947337 atattattagaggtagctaaacataaaaaatatacctactaactcaataaaatttatttttttggggtagccatagctatccctctcttgtataagcatt 12947436  T
Q  225 cgcccctg 232  Q
    ||||||||    
T  12947437 cgcccctg 12947444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 12933025 - 12933202
Alignment:
Q  27 cggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatata 126  Q
    ||||||| |||  ||||||||||| |||||| || || ||| |||| ||| ||| |||||||||||||||  |||||||||||||||||| | |||||||    
T  12933025 cggcgaagctaataataattttataaggtggtcacccgaaaataactaaagtcataaaaaattattacacaaaaaatcgaacttggggtaacaaaatata 12933124  T
Q  127 tattatcatgggtagctaaacat-aaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagcta 203  Q
    |||||| |  ||||||||||||| ||||||||||||||| ||| |||||||||||       ||||||||||||||||    
T  12933125 tattattagaggtagctaaacataaaaaatatacatactaactaaataaaatttatttttttggggtagccatagcta 12933202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 6735986 - 6735844
Alignment:
Q  89 tattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataa---aatttannnnn 185  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||||||||||| |||| |||||||||   |||||          
T  6735986 tattgcacctaaaatcgaacttggggtagccaaatatatattattagaggtagctaaatataaaaatatacctactaactcaataatttaattt---ttt 6735890  T
Q  186 nnggggtagccatagctacccctttgttgtacaagcattcgcccct 231  Q
       ||||||||||||||||||||| |||||||||||||||||||||    
T  6735889 tttgggtagccatagctaccccttggttgtacaagcattcgcccct 6735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 42092340 - 42092437
Alignment:
Q  127 tattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattc 225  Q
    |||||| | |||||||||||||||||||||||| |||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  42092340 tattattaggggtagctaaacataaaaatatacctactaactcaataaaattta-ttttttggggtagccatagctacccctttgttgtacaagcattc 42092437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 17769310 - 17769392
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||  ||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||    
T  17769310 aaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctact 17769392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 42091883 - 42091989
Alignment:
Q  25 agcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaata 124  Q
    |||||| || |||||||||||||||| | ||| | | || ||  |||| ||| ||||||||||||||||| |||||||| |||||||| |||||||||||    
T  42091883 agcggcaaagctagcaataattttataaagtgactacccgaaggtaaccaaagtcacaaaaaattattacgcctaaaatagaacttggagtagccaaata 42091982  T
Q  125 tatatta 131  Q
    | |||||    
T  42091983 tgtatta 42091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 21360984 - 21360904
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||  | |||||||||||| ||||||||||||||||||||||| | ||||||| ||| |||| ||||||| ||||    
T  21360984 aaaattatttaaactaaaatcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctact 21360904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 13517324 - 13517248
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||| || |||||||  ||||||||||||  ||||||||||||| | ||||||||||| ||||||||||||    
T  13517324 aaaaaattatttcatctaaaattaaacttggggtagttaaatatatattatta-gggtagctaaatataaaaatatac 13517248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 39685662 - 39685745
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatca-tgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  ||||||||||||| ||||||||||||| |  || |||||||| |||||||||||| ||||    
T  39685662 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattagaggatagctaaatataaaaatatacctact 39685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 42580514 - 42580455
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtag 141  Q
    ||||||||||| ||||||||||| || ||||| |||||||||||||||||| | ||||||    
T  42580514 aaaaaattatttcacctaaaatcaaaattgggatagccaaatatatattattaagggtag 42580455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 21361618 - 21361581
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggcca 60  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  21361618 tcagcggcgaagctagcaatatttttatgaggtggcca 21361581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 39684408 - 39684445
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggcca 60  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  39684408 tcagcggcgaagctagcaataattctatgaggtggcca 39684445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 44592723 - 44592518
Alignment:
Q  28 ggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatatat 127  Q
    |||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  44592723 ggcgaagctagcaataattttatgaggtggccacccgaaagtaacaaaagtcataaaaaattattacacctaaaatcaaacttggggtagccaaatatat 44592624  T
Q  128 attatcatgggtagctaaacataaaaatatacatactgactcaataaaattta-nnnnnnnggggtagccatagctacccctttgttgtacaagcattcg 226  Q
    ||||| | |||||||||||||||||||||||| |||| |||||||||| ||||        ||||||||||||||||||||| | |||||||||||||||    
T  44592623 attattaggggtagctaaacataaaaatatacctactaactcaataaagtttattttttttggggtagccatagctacccctctcttgtacaagcattcg 44592524  T
Q  227 cccctg 232  Q
    ||||||    
T  44592523 cccctg 44592518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 27773690 - 27773485
Alignment:
Q  27 cggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatata 126  Q
    ||||||| ||||||||||||||||||||| |||| || ||| | ||  || |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27773690 cggcgaagctagcaataattttatgaggtagccacccgaaagttaccgaagtcacaaaaaattattacacctaaaatcgaacttggggtaggcaaatata 27773591  T
Q  127 tattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcg 226  Q
    |||||| | |||||||||||||||||||||||| |||| || |||| |||||||       || |||||||||||||||||||||||||| ||||||||     
T  27773590 tattattaggggtagctaaacataaaaatatacctactaacacaatcaaatttatttttttggagtagccatagctacccctttgttgtagaagcattca 27773491  T
Q  227 cccctg 232  Q
    ||||||    
T  27773490 cccctg 27773485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 36156905 - 36157100
Alignment:
Q  35 ctagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatca 134  Q
    |||||||||||||||||||||||||| || ||| |||| ||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  36156905 ctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataagaaattattacacctaaaattgaacttggggtagccaaatatatattatta 36157004  T
Q  135 tgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcgcccct 231  Q
     |||||||||| ||||||||||||| ||   | |||||||||||||       |||||||||||||||| |||| | ||||||||||||||||||||    
T  36157005 ggggtagctaagcataaaaatatacctataaattcaataaaatttatttttttggggtagccatagcta-ccctcttttgtacaagcattcgcccct 36157100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 43022689 - 43022554
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 123  Q
    |||||||||| || |||||||||||||||||||||||||| ||| |||  ||| ||| |||||||||||||| |||||||||||||| ||||||||||||    
T  43022689 cagcggcgaagcttgcaataattttatgaggtggccatccgaaagtaatcaaaatcataaaaaattattacatctaaaatcgaactttgggtagccaaat 43022590  T
Q  124 atatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||| | |||||| |||||||||||||||||    
T  43022589 atatattattaggggtagttaaacataaaaatatac 43022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 50303873 - 50304083
Alignment:
Q  23 tcagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaatt-attacacctaaaatcgaacttggggtagccaa 121  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| ||| |||||| | | |||| |||||||||||| || | |||||||    
T  50303873 tcagcggcgaagctagcaataattttatgaggtggccatccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctgagatagccaa 50303972  T
Q  122 atatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagc 221  Q
    ||||||||||| | |||||||||||||||||||||||| |||  | |||||||||   |       |||||||||||| |||||||| | ||  ||||||    
T  50303973 atatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaaaaaaaaaaattggggtagccataactacccctctctttaacaagc 50304072  T
Q  222 attcgcccctg 232  Q
    |||||||||||    
T  50304073 attcgcccctg 50304083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 50099746 - 50099538
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaatt-attacacctaaaatcgaacttggggtagccaaa 122  Q
    |||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| |||||| | | |||| |||||||||||| |||||||| ||||    
T  50099746 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagtcaaa 50099647  T
Q  123 tatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagca 222  Q
    |||||||||| | |||||||||||||||||||||||| |||  | ||||| || |||        ||||||||||||||||||||| | ||  |||||||    
T  50099646 tatatattattaggggtagctaaacataaaaatatacctacaaattcaat-aattttttttttttggggtagccatagctacccctctctttaacaagca 50099548  T
Q  223 ttcgcccctg 232  Q
    ||||||||||    
T  50099547 ttcgcccctg 50099538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 43411067 - 43410921
Alignment:
Q  35 ctagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaa-ttattacacctaaaatcgaacttggggtagccaaatatatattatc 133  Q
    ||||||||||||||||||||| |||| || ||| |||| ||| ||| |||||| |||||||| |||||||| ||||| ||||| |||||||||||||||     
T  43411067 ctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaaattattacatctaaaatcaaacttagggtaaccaaatatatattatt 43410968  T
Q  134 atgggtagctaaacataaaaatatacatactgactcaataaaattta 180  Q
    | || |||||||| |||||||||||| |||| |||||||||||||||    
T  43410967 agggatagctaaatataaaaatatacctactaactcaataaaattta 43410921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 26633135 - 26632930
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaat-tca--caaaaaattattacacctaaaatcgaacttggggtagcca 120  Q
    |||||||||| ||||||| ||||||||||| ||| || || ||| |||  |||| |||  |||||||||||   ||||||||||||||||| |||| |||    
T  26633135 cagcggcgaagctagcaacaattttatgagatggtcacccgaaattaatcaaatgtcaaacaaaaaattat---acctaaaatcgaacttgaggtaacca 26633039  T
Q  121 aatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaattt-annnnnnnggggtagccatagctacccctttgttgtacaa 219  Q
    |||||||||||| |  |||| |||||||||||||||||| |||| |||||||    |||         | ||||||||||||||||||||||||||||||    
T  26633038 aatatatattatta-aggtaactaaacataaaaatatacctactaactcaattttttttgttttgtttgaggtagccatagctacccctttgttgtacaa 26632940  T
Q  220 gcattcgccc 229  Q
    ||||||||||    
T  26632939 gcattcgccc 26632930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 10619875 - 10619793
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||  ||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||    
T  10619875 aaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctact 10619793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 29681158 - 29681098
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagcta 144  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  29681158 aaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagcta 29681098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 7493479 - 7493397
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||||||    |||||||||| |||||||||||| ||||    
T  7493479 aaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattggaggtagctaaatataaaaatatacctact 7493397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 44429812 - 44429893
Alignment:
Q  83 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||||||| ||| ||||||  || |||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||    
T  44429812 aaaaattatttcacttaaaattaaatttggggtagccaaataaatattattaggggtagctaaatataaaaatatacctact 44429893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 43022539 - 43022452
Alignment:
Q  144 aaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcgcccctg 232  Q
    |||||||||||||||| |||| |||||||||||||||       ||| ||||||||||||||||| | |||||||| ||||||||||||    
T  43022539 aaacataaaaatatacctactaactcaataaaatttatttttttggg-tagccatagctacccctctcttgtacaaacattcgcccctg 43022452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 39618450 - 39618512
Alignment:
Q  97 ctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    |||||| | ||||||||||||||||||||||||||| | |||||||| || ||||||||||||    
T  39618450 ctaaaagcaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatac 39618512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 48366676 - 48366736
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagcta 144  Q
    ||||||||| || |||||||| ||||| || |||||||||||||||||||| |||||||||    
T  48366676 aaaattatttcaactaaaatcaaacttaggatagccaaatatatattatcaggggtagcta 48366736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 6764568 - 6764477
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaata 173  Q
    ||||||||||| || |||||||  || ||||| |||||||||||||||||| |  ||||||| || | ||||||||||||||| | ||||||    
T  6764568 aaaaaattattccatctaaaattaaatttgggatagccaaatatatattattagcggtagcttaatacaaaaatatacatactcattcaata 6764477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 15757488 - 15757406
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||| |||||| || |||||||  ||||||||||||  ||||||||||||| | |||||| |||| |||||||||||| ||||    
T  15757488 aaaatattatttcatctaaaattaaacttggggtagttaaatatatattattaggggtagataaatataaaaatatacctact 15757406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 37057664 - 37057456
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 123  Q
    |||||||||| |||||||||||||||||||||| ||| || ||| |||| ||| | | ||||| ||||| ||||||||||||||||||||||||||||||    
T  37057664 cagcggcgaagctagcaataattttatgaggtgaccacccgaaagtaaccaaagttataaaaagttattgcacctaaaatcgaacttggggtagccaaat 37057565  T
Q  124 atatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcat 223  Q
    ||||||||| | |||||||||||||||||||||||| |||| |||||||||||||||       ||||| ||||||||||||||| |  |||||||||||    
T  37057564 atatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggggtggccatagctacccctctcctgtacaagcat 37057465  T
Q  224 tcgcccctg 232  Q
    |||||||||    
T  37057464 tcgcccctg 37057456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 22775201 - 22775410
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 123  Q
    |||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  22775201 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattattacacctaaaatcgaacttggggtagccaaat 22775300  T
Q  124 atatattatcatgggtagctaaacataaaaatatacatactgactcaat-aaaatttannnnnnnggggtagccatagctacccctttgttgtacaagca 222  Q
    ||||||||| | |||||||||||||||||||||||| |||  | ||||| ||||   |       ||||||||||||||||||||| | |||||||||||    
T  22775301 atatattattaggggtagctaaacataaaaatatacctacaaattcaataaaaaaaaatttttttggggtagccatagctacccctctcttgtacaagca 22775400  T
Q  223 ttcgcccctg 232  Q
    ||| ||||||    
T  22775401 ttcacccctg 22775410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 37224526 - 37224382
Alignment:
Q  28 ggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatatat 127  Q
    |||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  37224526 ggcgaagctagcaataattttatgaggtggccacccgaaagtaacaaaagtcataaaaaattattacacctaaaatcgaacttgggatagccaaatatat 37224427  T
Q  128 attatcatgggtagctaaacataaaaatatacatactgactcaat 172  Q
    ||||| | |||||||||||||||||||||||| |||| |||||||    
T  37224426 attattaggggtagctaaacataaaaatatacctactaactcaat 37224382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 26769761 - 26769897
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaatt-attacacctaaaatcgaacttggggtagccaaa 122  Q
    |||||||||| |||||||||||||||||||||||||| |||||| |||| ||| ||| |||||| | | |||| ||||||||||||||||||||||||||    
T  26769761 cagcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacttggggtagccaaa 26769860  T
Q  123 tatatattatcatgggtagctaaacataaaaatatac 159  Q
    |||||||||| | ||||||||||||||||||||||||    
T  26769861 tatatattattaggggtagctaaacataaaaatatac 26769897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 46823616 - 46823534
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||  ||||||||||||| || |||||||||| | ||||||||||| |||||||||||| ||||    
T  46823616 aaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctact 46823534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 17653321 - 17653398
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||| ||| ||||||  ||||||||||||| ||||||||||||| | |||||| |||| ||||||||||||    
T  17653321 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatac 17653398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 30500936 - 30500998
Alignment:
Q  97 ctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    |||||||| ||||||||||||||| ||||||||||| | |||||||| || ||||||||||||    
T  30500936 ctaaaatcaaacttggggtagccagatatatattattaggggtagcttaatataaaaatatac 30500998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 35238723 - 35238785
Alignment:
Q  97 ctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    |||||||  ||||||||||||||||||||||||||| | |||||||| || ||||||||||||    
T  35238723 ctaaaattaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatac 35238785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 15871337 - 15871428
Alignment:
Q  83 aaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataa 174  Q
    |||||||||| ||||| ||||| | | |||| |||||||||||| ||||  | ||||||||||| |||||||||||| || | |||||||||    
T  15871337 aaaaattattgcaccttaaatcaagcatgggatagccaaatataaattactaagggtagctaaatataaaaatatacctattaactcaataa 15871428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 35734411 - 35734493
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  || || ||||||| ||||| ||||||| | ||||| ||||| |||||||||||| ||||    
T  35734411 aaaaaattatttcacttaaaataaaatttagggtagctaaatacatattattaagggtaactaaatataaaaatatacctact 35734493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 37224368 - 37224332
Alignment:
Q  188 ggggtagccatagctacccctttgttgtacaagcatt 224  Q
    ||||||||||||||||||||| | |||||||||||||    
T  37224368 ggggtagccatagctacccctctcttgtacaagcatt 37224332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 52724684 - 52724636
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattat 132  Q
    |||||||||  | ||||| |||||| |||||||||||||||||||||||    
T  52724684 aaaattatttaaactaaagtcgaacatggggtagccaaatatatattat 52724636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 52725319 - 52725283
Alignment:
Q  22 ctcagcggcgaaactagcaataattttatgaggtggc 58  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  52725319 ctcagcggcgaagctagcaatatttttatgaggtggc 52725283  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 7590437 - 7590643
Alignment:
Q  25 agcggcgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaata 124  Q
    ||||||||| |||||||||||||||||||||||||| || ||| |||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  7590437 agcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattattacatctaaaatcgaacttggggtagccaaata 7590536  T
Q  125 tatattatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcatt 224  Q
    |||||||| | |||||||||||||||||||||||| |||  | |||||||  |||        ||||||| ||||||||||||| | ||| |||||||||    
T  7590537 tatattattaggggtagctaaacataaaaatatacctacaaattcaataatttttttttttttggggtagtcatagctacccctctcttggacaagcatt 7590636  T
Q  225 cgcccct 231  Q
    |||||||    
T  7590637 cgcccct 7590643  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 3886222 - 3886127
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaat 177  Q
    ||||||||||| ||  ||||||  ||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||  ||||| |||||    
T  3886222 aaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcgctcaaaaaaat 3886127  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 583292 - 583387
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaat 177  Q
    ||||||||||| ||  ||||||  ||||||||||| ||||||||||||||| | ||||||||||| |||||||||||| ||||  ||||| |||||    
T  583292 aaaaaattatttcatttaaaataaaacttggggtaaccaaatatatattattaggggtagctaaatataaaaatatacctactcgctcaaaaaaat 583387  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 13703156 - 13703074
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||  |||||| |||||| ||||||||||||| | ||||||||||| |||||||||||| ||||    
T  13703156 aaaaaattatttcatctaaaattaaacttgaggtagctaaatatatattattaggggtagctaaatataaaaatatacctact 13703074  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 34729587 - 34729510
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||| ||| ||||||  ||||||||||||| ||||||||| ||| | ||||||||||| ||||||||||||    
T  34729587 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatactattaggggtagctaaatataaaaatatac 34729510  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 29363878 - 29363960
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  || |||||||||| ||||||||||||| | | ||||||||| |||||||||||| ||||    
T  29363878 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggagtagctaaatataaaaatatacctact 29363960  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 5122286 - 5122360
Alignment:
Q  80 acaaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaa 154  Q
    ||||||| ||||| ||| |||||||||||||||||||| |||| ||||||||| | ||||| ||| | |||||||    
T  5122286 acaaaaatttatttcacataaaatcgaacttggggtagtcaaaaatatattattaggggtaactatatataaaaa 5122360  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 30386795 - 30386877
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    |||||| |||| ||| ||||||  |||||| | |||| ||||||||||||| | ||||||||||| |||||||||||| ||||    
T  30386795 aaaaaaatatttcacttaaaattaaacttgagatagctaaatatatattattaggggtagctaaatataaaaatatacctact 30386877  T

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Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 234
Target Start/End: Original strand, 33538307 - 33538511
Alignment:
Q  30 cgaaactagcaataattttatgaggtggccatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaatatatat 129  Q
    |||| ||||||||||||||||||||||| || || ||| |||| ||| ||| |||||||||| ||||||||||||||||| | |||| ||||||||||||    
T  33538307 cgaagctagcaataattttatgaggtggtcacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaactcgaggtaaccaaatatatat 33538406  T
Q  130 tatcatgggtagctaaacataaaaatatacatactgactcaataaaatttannnnnnnggggtagccatagctacccctttgttgtacaagcattcgccc 229  Q
    ||| | | |||||||||||||||||||||| |||  | |||||||  |||        ||||||||||||||||||||| | |||||||||| |||||||    
T  33538407 tattaggagtagctaaacataaaaatatacctacaaattcaataatttttttttttttggggtagccatagctacccctctcttgtacaagccttcgccc 33538506  T
Q  230 ctgag 234  Q
    |||||    
T  33538507 ctgag 33538511  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 18606100 - 18606005
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaat 177  Q
    ||||||||||| ||| ||||||  ||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||  ||||| |||||    
T  18606100 aaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcgctcaaaaaaat 18606005  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 21441927 - 21442009
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||  ||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||    
T  21441927 aaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctact 21442009  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 4072561 - 4072643
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||  ||||||||||||| || |||||||||| | ||||||||||| |||||||||||| ||||    
T  4072561 aaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctact 4072643  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 41323515 - 41323597
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| || |||||||  ||||||||||||| || |||||||||| | ||||||||||| |||||||||||| ||||    
T  41323515 aaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctact 41323597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 10713931 - 10713856
Alignment:
Q  84 aaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||| ||| ||||||||||  |||||||||||||||||| |||||||| | |||||| | || ||||||||||||    
T  10713931 aaaataatttcacctaaaattaaacttggggtagccaaatgtatattataaggggtagtttaatataaaaatatac 10713856  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 7559082 - 7559178
Alignment:
Q  80 acaaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaa 176  Q
    ||||||||||||| ||| ||||| ||||||||||||||| ||| ||||||| | |  ||||| || | || ||||||||| |||| | |||||||||    
T  7559082 acaaaaaattattccacataaaaccgaacttggggtagctaaagatatatttttagaggtagttatatatgaaaatatacctactcattcaataaaa 7559178  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 30932150 - 30932215
Alignment:
Q  94 cacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatac 159  Q
    ||||||||||| |||||||| |||||||| ||||||||| | ||  |||| || ||||||||||||    
T  30932150 cacctaaaatcaaacttgggatagccaaacatatattattagggacagcttaatataaaaatatac 30932215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 10718625 - 10718585
Alignment:
Q  20 cgctcagcggcgaaactagcaataattttatgaggtggcca 60  Q
    |||||||||||||| |||||| || ||||||||||||||||    
T  10718625 cgctcagcggcgaagctagcattatttttatgaggtggcca 10718585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 46956 - 46861
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatactgactcaataaaat 177  Q
    ||||||||||| ||  ||||||  ||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||| |||||| |||||    
T  46956 aaaaaattatttcatttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctactcactcaaaaaaat 46861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 15084 - 15002
Alignment:
Q  82 aaaaaattattacacctaaaatcgaacttggggtagccaaatatatattatcatgggtagctaaacataaaaatatacatact 164  Q
    ||||||||||| ||| ||||||  || |||||||||| ||||||||||||| | ||||||||||  |||||||||||| ||||    
T  15084 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggggtagctaattataaaaatatacctact 15002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 15848 - 15812
Alignment:
Q  24 cagcggcgaaactagcaataattttatgaggtggcca 60  Q
    |||||||||| |||||||||||| |||||||||||||    
T  15848 cagcggcgaagctagcaataattctatgaggtggcca 15812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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