View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16612_low_19 (Length: 287)
Name: NF16612_low_19
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 44965769 - 44965493
Alignment:
| Q |
1 |
tgcaacagcgtatcatcactcctgttcgccggagaactggctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965769 |
tgcaacaacgtatcatcactcctgttcgccggagaactagctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcc |
44965670 |
T |
|
| Q |
101 |
cagccggaaaactcccctgtttctctttcctcaaagagccaaccgccggtgaagacgacggcgaagccgtcactgtcatcccctcgccggagaatttcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44965669 |
cagccggaaaactcccctgtttctctttcctcaaagagccaaccgccggtgaagacgacggtgaagctgtcactgtcatcccctcgccggagaatttcac |
44965570 |
T |
|
| Q |
201 |
cttatcaccatacctcttcgaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965569 |
cttatcaccatacctcttcgaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttg |
44965493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University