View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_low_2 (Length: 605)
Name: NF16612_low_2
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 10 - 588
Target Start/End: Complemental strand, 43987382 - 43986803
Alignment:
| Q |
10 |
catcatcatttcaaatcttttcctcactcctccttccttcc----cccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac |
105 |
Q |
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| T |
43987382 |
catcatcatttcaaatcttttcctcactcctccttccttccttcccccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac |
43987283 |
T |
|
| Q |
106 |
cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc |
205 |
Q |
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| T |
43987282 |
cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc |
43987183 |
T |
|
| Q |
206 |
acagtcagcaacaacacacgctcatgtccttctcttcctcctataatataaccttaccttacactatccaaattcaactcaactcaaaacaaaacaacta |
305 |
Q |
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| T |
43987182 |
acagtcagcaacaacacacgctcatgtccttctcttcct---ataatataaccttaccttacactatccaagttcaactcaactcaaaacaaaacaacta |
43987086 |
T |
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| Q |
306 |
tagtatagtgtattattatgaatttgtttgtttcaattaaataatgactagttctcatcttactaatcaaagggatcgccgtatcctatcattcccggcg |
405 |
Q |
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|||| || | | ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43987085 |
tagtgtattattatattatgaatttgtttgtttcaattcaataatgactagtactcatcttactaatcaaagggatcgccgtatcctatcattcccggcg |
43986986 |
T |
|
| Q |
406 |
gttcacccttgcgaaaacatatctcccacaacactcatcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacac |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986985 |
gttcacccttgcgaaaacatatctcccacaacactcatcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacac |
43986886 |
T |
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| Q |
506 |
aaaaacgtaacgcaagagaaactatacgtcaaattactataatttcaattttcctcaacgaaattaaagaccatggttccatt |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986885 |
aaaaacgtaacgcaagagaaactatacgtcaaattactataatttcaattttcctcaacgaaattaaagaccatggttccatt |
43986803 |
T |
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