View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16612_low_20 (Length: 274)

Name: NF16612_low_20
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16612_low_20
NF16612_low_20
[»] chr1 (2 HSPs)
chr1 (16-255)||(42205635-42205874)
chr1 (16-255)||(42214503-42214742)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 42205874 - 42205635
Alignment:
Q  16 agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205874 agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt 42205775  T
Q  116 tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcattctggc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205774 tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcattctggc 42205675  T
Q  216 agatttgtttggagatatactttgaaccatgtactacttg 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42205674 agatttgtttggagatatactttgaaccatgtactacttg 42205635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 42214742 - 42214503
Alignment:
Q  16 agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214742 agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt 42214643  T
Q  116 tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcattctggc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214642 tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagttacaatgctgattttttattcattctggc 42214543  T
Q  216 agatttgtttggagatatactttgaaccatgtactacttg 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42214542 agatttgtttggagatatactttgaaccatgtactacttg 42214503  T

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