View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_low_22 (Length: 252)
Name: NF16612_low_22
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_low_22 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 32159089 - 32159207
Alignment:
| Q |
135 |
atacacacacttgtacgcctgtttcagataacaaatgaaatcatttttgtaacttttatgaaaacggtttgactatattttatcttttgttactt-aaat |
233 |
Q |
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| T |
32159089 |
atacacacacttgtacgactgtttcagataacaaatgaaatcatttttgtaacttttatgaaaacggtttgactatattttatcttttgttacttaaaat |
32159188 |
T |
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| Q |
234 |
agtttcattaaattgtggc |
252 |
Q |
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| T |
32159189 |
agtttcattaaattgtggc |
32159207 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 32159053 - 32159106
Alignment:
| Q |
81 |
catcttgaatttaatcatttggcccttttctactgacatacacacacttgtacga |
135 |
Q |
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| T |
32159053 |
catcttgaatttaatcatttg-cccttttctactgacatacacacacttgtacga |
32159106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 40122826 - 40122872
Alignment:
| Q |
189 |
tttatgaaaacggtttgactatattttatcttttgttacttaaatag |
235 |
Q |
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| T |
40122826 |
tttatgaaaacagtttgactttattttatcttttgttattgaaatag |
40122872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 20192682 - 20192726
Alignment:
| Q |
191 |
tatgaaaacggtttgactatattttatcttttgttacttaaatag |
235 |
Q |
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| T |
20192682 |
tatgaaaactgtttgactttattttatcttttgttatataaatag |
20192726 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 3181144 - 3181177
Alignment:
| Q |
191 |
tatgaaaacggtttgactatattttatcttttgt |
224 |
Q |
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| T |
3181144 |
tatgaaaacggtttgactttattttatcttttgt |
3181177 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 7096202 - 7096238
Alignment:
| Q |
190 |
ttatgaaaacggtttgactatattttatcttttgtta |
226 |
Q |
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| T |
7096202 |
ttatgaaaatggtttgactttattttatcttttgtta |
7096238 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 41701517 - 41701561
Alignment:
| Q |
191 |
tatgaaaacggtttgactatattttatcttttgttacttaaatag |
235 |
Q |
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| T |
41701517 |
tatgaaaacgatttgactttattttatcttttgttatataaatag |
41701561 |
T |
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