View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_low_5 (Length: 440)
Name: NF16612_low_5
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 85 - 425
Target Start/End: Complemental strand, 38300785 - 38300445
Alignment:
| Q |
85 |
tatattatatataagaataaaagaaaatagcaaagtctttgggtttgaacagagaattgctaggtcacttttaaaaaggaggttgacaaaataccctcca |
184 |
Q |
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| T |
38300785 |
tatattatatataagaataaaagaaaatagcaaagtctttgggtttgaacagagaattgctaggtcacttttaaaaaggaggttgacaaaataccctcca |
38300686 |
T |
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| Q |
185 |
atcaaaagagtagaaagtgcatgctttctcatatggaaacatttttagaccatcttacttccattaaggaaactcatcaatattagttaagcagataggg |
284 |
Q |
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| T |
38300685 |
atcaaaagagtagaaagtgcatgctttctcatatggaaacatttttagaccatcttacttccattaaggaaactcatcaatattagttaagcagataggg |
38300586 |
T |
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| Q |
285 |
agattaatgtcactttgcatttgcagcctcacctatatgtaaataaatcaaaaggcatatattgttaatattctaattttaatacattattttcatgtaa |
384 |
Q |
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| T |
38300585 |
agattaatgtcactttgcatttgcagcctcacctatatgtaaataaatcaaaaggcatatattgttaatattctaattttaatacattattttcatgtaa |
38300486 |
T |
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| Q |
385 |
aattctttacatgatatgtatacgaattaaatcatattatt |
425 |
Q |
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| T |
38300485 |
aattctttatatgatatgtatacgaattaaatcatattatt |
38300445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38300889 - 38300821
Alignment:
| Q |
1 |
gagaaagatatatagaagcaaaagagaagagtgtgtagtgaggttggtttgttttgaagtcttatctct |
69 |
Q |
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| T |
38300889 |
gagaaagatatatagaagcaaaagagaagagtgtgtagtgaggttggtttgttttgaagtcttatctct |
38300821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 3732434 - 3732406
Alignment:
| Q |
5 |
aagatatatagaagcaaaagagaagagtg |
33 |
Q |
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| T |
3732434 |
aagatatatagaagcaaaagagaagagtg |
3732406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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