View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16612_low_6 (Length: 424)
Name: NF16612_low_6
Description: NF16612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16612_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 41 - 413
Target Start/End: Original strand, 34335363 - 34335734
Alignment:
| Q |
41 |
tttcattttatttggattatgtattattgttcaaattaaataaaatctgttcatgtgctgaatatagaatcataaaggagctatgatggagttaggggag |
140 |
Q |
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| T |
34335363 |
tttcattttatttggattatgtattattgttcaaattaaataaaatctgttcatgtgctgaatatagaatcataaaggagctatgatggagttaggggag |
34335462 |
T |
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| Q |
141 |
ggactatgtaaactgagaaagatggagttccctaatggaccgtttcttaagtttgagaaagatatttcagcagttttggaatttatctaccagacacaaa |
240 |
Q |
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| T |
34335463 |
ggactatgtaaactgagaaagatggagttccctaatggaccgtttcttaagtttgagaaagatatttcagcagttttggaatttatctaccagacgcaaa |
34335562 |
T |
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| Q |
241 |
tagagttagctgcatgtgagtaatttcattcttgaaatgttaggtatcacatgatacatgcaagttgtatcttaatccgaatcaaaatcgaactcaacga |
340 |
Q |
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| T |
34335563 |
tagagttagctgcatgtgagtaattccattcttg-aatgttaggtatcacatgatacatgcaagttgtatcttaatccgaatcaaaatcgaactcaacga |
34335661 |
T |
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| Q |
341 |
acacaaatgttatatgattggttttggagaaattacannnnnnnnaacttgaatttgagcaggtagtgatgat |
413 |
Q |
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| T |
34335662 |
acacaaatgttatatgattggttttggagaaattacattttttttaacttgaatttgagcaggtagtgatgat |
34335734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 34335434 - 34335394
Alignment:
| Q |
14 |
tgattctacattcagcacatgaacagatttcattttatttg |
54 |
Q |
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| T |
34335434 |
tgattctatattcagcacatgaacagattttatttaatttg |
34335394 |
T |
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