View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16613_low_1 (Length: 343)
Name: NF16613_low_1
Description: NF16613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16613_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 35127805 - 35128118
Alignment:
| Q |
11 |
agcagagagagacaatgaaatggttgatgttagcgaggaaagtgtcatattggataatgattatgggcaaagggctgtgaacgaggagttcgagccggaa |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35127805 |
agcaaagagagacaatgaaatggttgatgttagtgaggaaagtgtgatattggataatgattatgggcaaagggctgtgaacgaggagttcgagccggaa |
35127904 |
T |
|
| Q |
111 |
ttatcacattcaagtgatgccaacgatgtcatccagtacaatggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataagc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35127905 |
ttatcacattcaagtgatgccaacgatgtcatccagtacaatggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataagc |
35128004 |
T |
|
| Q |
211 |
ttgatgatgagaagccgatgagtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35128005 |
ttgatgatgagaagccgatgagtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggtgtcacaaatgttgt |
35128104 |
T |
|
| Q |
311 |
tttagaggaatgtg |
324 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35128105 |
tttagaggaatgtg |
35128118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University