View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16613_low_2 (Length: 315)
Name: NF16613_low_2
Description: NF16613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16613_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 30295719 - 30295440
Alignment:
| Q |
22 |
cgcggcagcatgagcaaccagcaacacaaacgccgagcacggaagaaggaagtttggtgtcacatcagattccatcctacaagtatgagaagaaaaggan |
121 |
Q |
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| T |
30295719 |
cgcggcagcatgagcaaccagcaacacaaacgctgagcacggaagaaggaagtttggtgtcacatcagattccatcctacaagtatgagaagaaaaggaa |
30295620 |
T |
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| Q |
122 |
nnnnnnnnnnnnnnnnnnnnnntgtgtgacttgtgctgtgtgcttaggagactttgaggaaggtgaggagttgagggctatgccttcttgcatgcactct |
221 |
Q |
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| T |
30295619 |
tgatgataatgatgatgatgattgtgtgacttgtgctgtgtgcttaggagactttgaggaaggtgaggagttgagggctatgccttcttgcatgcactct |
30295520 |
T |
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| Q |
222 |
ttccatgtaccatgcattgatatgtggctcctttcacatctcaattgtcctgtttgccgtgctgatgccacgccctcccc |
301 |
Q |
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| T |
30295519 |
ttccatgtaccatgcattgatatgtggctcctttcacatctcaattgtcctgtttgccgtgctgatgccacgccctcccc |
30295440 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 11034205 - 11034329
Alignment:
| Q |
153 |
tgtgctgtgtgcttaggagactttgaggaaggtgaggagttgagggctatgccttcttgcatgcactctttccatgtaccatgcattgatatgtggctcc |
252 |
Q |
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||||| ||||| || ||||| ||||||||||||||||| |||||| |||||||| ||| |||| ||||| |||||| || ||||| |||||||||| |
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| T |
11034205 |
tgtgcggtgtgtttgggagattttgaggaaggtgaggaattgaggactatgcctgagtgcttgcattcttttcatgtaaagtgtattgacatgtggctcc |
11034304 |
T |
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| Q |
253 |
tttcacatctcaattgtcctgtttg |
277 |
Q |
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| T |
11034305 |
attcgcatttgaattgccccgtttg |
11034329 |
T |
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