View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16613_low_7 (Length: 210)
Name: NF16613_low_7
Description: NF16613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16613_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 9877027 - 9876847
Alignment:
| Q |
13 |
aagaatatgcagaactgaataacatatagagagaaaaggcttggtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccata |
112 |
Q |
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| T |
9877027 |
aagaacatgcagaactgaataacatatagagagaaaaggcttagtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccata |
9876928 |
T |
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| Q |
113 |
gaaatttcttcaataaaacaacttatctctgatttcttctccattatttctctcttaccactcttcatatttcaccaacct |
193 |
Q |
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| T |
9876927 |
gaaagttcttcaataaaacaacttatctctgatttcttctccattatttctctcttaccacgcttcatatttcaccaacct |
9876847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 9871364 - 9871204
Alignment:
| Q |
30 |
aataacatatagagagaaaaggcttggtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccaccatagaaatttcttcaataaa |
129 |
Q |
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|||||||||||||||| |||||||| | || || |||||||||||| | |||||| ||| ||||||||||| || | |||||||| ||||||||||| |
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| T |
9871364 |
aataacatatagagaggaaaggcttaatagggatgtgagcagcttcaagattttctccagaaggtttaactatcacaatcatagaaagctcttcaataaa |
9871265 |
T |
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| Q |
130 |
acaacttatctctgatttcttctccattatttctctcttaccactcttcatatttcaccaacct |
193 |
Q |
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| T |
9871264 |
acaacttatctctgatttcttctcc---atttctctctttgcactcttcatatttcactaacct |
9871204 |
T |
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