View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16614_low_1 (Length: 472)
Name: NF16614_low_1
Description: NF16614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16614_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 43817513 - 43817785
Alignment:
| Q |
17 |
attttctactgtgcaataaagttttattgtttgaaaaggcaatactttgtaataatcgtttgagcataaggataaactgataaaagtgtgtgttacttga |
116 |
Q |
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| T |
43817513 |
attttctactgtgcaatcaaattttattgtttgaaaaggcaatactttgtaataatcgtttgagcataaggataaactgataaaagtgtgtgttacttga |
43817612 |
T |
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| Q |
117 |
attttacttcaaataattaccctattgaattaaaatgtgcataaaatacttgaaagataatgtggcataagaagtatcacttaagagttaagagtaggta |
216 |
Q |
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| T |
43817613 |
attttacttgaaataattaccctattgaattaaaatgtgcataaaatacttgaaagataatgtggcataagaagtatcacttaagagttaagagtaggta |
43817712 |
T |
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| Q |
217 |
aacaatcagaaattggctacttaattgcccattaaagattctataaattttgagctggtttaatagtctatct |
289 |
Q |
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| T |
43817713 |
aacaatcagaaattggctacttaattggccattaaagattctataaattttgagctggtttaatagtctatct |
43817785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 323 - 457
Target Start/End: Original strand, 43817785 - 43817919
Alignment:
| Q |
323 |
tccaattaaattatttctcatgaggggaaggataaatgaaaaacaaaagttaaaagtaccaatgatatcacatcagggactttgaaaagaaaaggttgtc |
422 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43817785 |
tccaattaaattatttctcatgagggaaaggataaatgaaaaacaaaagttaaaagtaccaatgatatcacatcagggacttcgaaaagaaaaggttgtc |
43817884 |
T |
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| Q |
423 |
cccacctttgattcgaatctggattcctacctttg |
457 |
Q |
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| T |
43817885 |
cccacctttgattcgaatctggattcctacctttg |
43817919 |
T |
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