View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16614_low_2 (Length: 335)
Name: NF16614_low_2
Description: NF16614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16614_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 52234230 - 52234550
Alignment:
| Q |
17 |
agaaacttcatcttcctcctcctcaccaacaacaacgctaaagtggaaataaagaagagaaattctggaaatttcaatagcatattattgattcatgaac |
116 |
Q |
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| T |
52234230 |
agaaacttcatcttcctcctcctcaccaacaacaacgctaaagtggaaataaagaagagaaattctgaaaatttcaatagcatattattgattcatgaac |
52234329 |
T |
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| Q |
117 |
aattgttacggaatccccatctcacaaaagaaaaattcagatctgacatacgaagaaagtgtttg-------------aagatttgatgcattccctcta |
203 |
Q |
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| T |
52234330 |
aattgttacagaatccccatctcacaaaagaaaaattcagatctgacatacgaagaaagtgagtgacaaaaaaaaataaaaaaatgatgcattccctcta |
52234429 |
T |
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| Q |
204 |
atatccttcactttccagaaccatattttctatgtccaccggaatgaaaacccatttattccttttcgattgaacatattgagctcctgaaatacagcca |
303 |
Q |
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| T |
52234430 |
atatccttcactttccagaaccctgttttctatgtccaccggaatgaaaactcatttatttcttttcgattgaacatattgagctcctgaaatacagcca |
52234529 |
T |
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| Q |
304 |
tcgatctccatcatctttcat |
324 |
Q |
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| T |
52234530 |
tcgatctccatcatctttcat |
52234550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 40490397 - 40490343
Alignment:
| Q |
53 |
gctaaagtggaaataaagaagagaaattctggaaatttcaatagcatattattga |
107 |
Q |
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| T |
40490397 |
gctaaagtggaaacaaagaagagaaatattggaaattgcaatagcatattattga |
40490343 |
T |
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