View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16615_high_3 (Length: 593)
Name: NF16615_high_3
Description: NF16615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16615_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 1216474 - 1217026
Alignment:
| Q |
1 |
ctcaatccagagctgatgggggacctgtctgagaaatttgttgtgcaggttcaaaaaatttcaagtagccttttttgtgaggattgtaattcgtagcgat |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1216474 |
ctcaatccagatctgatgggggacctgtctgagaaatttgttgtgcaggttcaaaaaatttcaagtagccttttttgtgaggattgtaattcgtagcaat |
1216573 |
T |
|
| Q |
101 |
ttgcatttaattatttactcaagtgattgtgagcaaggagaaggttccaaatgaagggttattcaacggatataatggtggcaaggagatttgtggagtc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216574 |
ttgcatttaattctttactcaagtgattgtgagcagggagaaggttccaaatgaagggttattcaacggatataatggtggcaaggagatttgtggagtc |
1216673 |
T |
|
| Q |
201 |
tctttcttgtgccaattctcggtattaagctagtttgacatagttggaacacaagcatgaagcatgtagatgtgtgtaatatcaatatcaaattttcaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216674 |
tctttcttgtgccaattctcggtattaagctagtttagcatagttggaacacaagcatgaagcatgtagatgtgtgtaatatcaatatcaaattttcaac |
1216773 |
T |
|
| Q |
301 |
ctttaaattggtctttttgctatctattatggcttgctgttcatgataaggcaattgggacctaatgtcatcttagcagttagcatgctttgtatttggt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216774 |
ctttaaattggtctttttgctatctattatggcttgctgtttatgataaggcaattgggccctaatgtcatcttagcagttagcatgctttgtatttggt |
1216873 |
T |
|
| Q |
401 |
agaaataaaagatgggaggttaggttagtaatatgcttatcagaattggagctgcatgggaccttaatttgcaacaatgagactttttattgaggcgtag |
500 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1216874 |
agaaataaaatatgggaggttaggttagtaatatgcttatcagaattggtgctgcatgggaccttaatttgcaacaatgagactttttattgaggcgtgg |
1216973 |
T |
|
| Q |
501 |
aagatttggtttggaactgtattgatttatgaactactttcttatttttgctt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1216974 |
aagatttggtttggaactgtattgatttatgaactattttcttatttttgctt |
1217026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 41103179 - 41103343
Alignment:
| Q |
72 |
tttttgtgaggattgtaattcgtagcgatttgcatttaattatttactcaagtgattgtgagcaaggagaaggttccaaatgaagggttattcaacggat |
171 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| ||| |||| ||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |
|
|
| T |
41103179 |
tttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttccaa-tgaagggttattcagtggat |
41103277 |
T |
|
| Q |
172 |
ataatggtggcaaggagatttgtggagtctctttcttgtgccaattctcggtattaagctagtttg |
237 |
Q |
| |
|
|| |||||| |||| ||||||||||||||||||||| |||||||||| | ||| || ||||||||| |
|
|
| T |
41103278 |
atcatggtgacaagtagatttgtggagtctctttctcgtgccaattcacagtaatatgctagtttg |
41103343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 41088738 - 41088915
Alignment:
| Q |
58 |
atttcaagtagccttttttgtgaggattgtaattcgtagcgatttgcatttaattatttactcaagtgattgtgagcaaggagaaggttccaaatgaagg |
157 |
Q |
| |
|
|||||||||||| |||||| |||| ||| |||||||||| |||| |||| ||| ||| |||||||||||| |||| | ||| |||||||| ||||| |
|
|
| T |
41088738 |
atttcaagtagcatttttta-gaggcttgcaattcgtagcagtttgtatttcattcttttatcaagtgattgtaagcaggtagatggttccaa-tgaagt |
41088835 |
T |
|
| Q |
158 |
gttattcaacggatataatggtggcaaggagatttgtggagtctctttcttgtgccaattctcggtattaagctagtttg |
237 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||| ||| ||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
41088836 |
gttattcagaggatatcatggtggtaaggagatttatggggtctctttcttgtgccaattcgcagtattatgctagtttg |
41088915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 574
Target Start/End: Original strand, 41103704 - 41103787
Alignment:
| Q |
491 |
tgaggcgtagaagatttggttt-ggaactgtattgatttatgaactactttcttatttttgctttgttcagaagtgtggtgtttc |
574 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||||||||| ||||| ||||||| ||||| ||||||||| |||||| |
|
|
| T |
41103704 |
tgaggcatagaagatttggttttggaactgtattggattatgaactattttctggtttttgc-ttgtttagaagtgtgttgtttc |
41103787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 512
Target Start/End: Original strand, 41089252 - 41089354
Alignment:
| Q |
421 |
taggttagtaatatgcttatcagaattggagctg----------catgggaccttaatttgcaacaatgag-actttttattgaggcgtagaagatttgg |
509 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||| |||||| | ||||| |||||||||||||||||||| |
|
|
| T |
41089252 |
taggttagtaatatgcttatgagaattggagctgcatcatgattcatgtgaccttaatatgcaagaatgagaattttttgttgaggcgtagaagatttgg |
41089351 |
T |
|
| Q |
510 |
ttt |
512 |
Q |
| |
|
||| |
|
|
| T |
41089352 |
ttt |
41089354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 456
Target Start/End: Original strand, 41103641 - 41103675
Alignment:
| Q |
422 |
aggttagtaatatgcttatcagaattggagctgca |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103641 |
aggttagtaatatgcttatcagaattggagctgca |
41103675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 41080847 - 41080894
Alignment:
| Q |
157 |
ggttattcaacggatataatggtggcaaggagatttgtggagtctctt |
204 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
41080847 |
ggttattcagaggatatcatggtggcaatgagatttgtggagtctctt |
41080894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 41080776 - 41080850
Alignment:
| Q |
72 |
tttttgtgaggattgtaattcgtagcgatttgcatttaattatttactcaagtgattgtgagcaaggagaaggtt |
146 |
Q |
| |
|
||||| ||||| ||||||||| ||| ||||||||| ||| |||| |||| |||||||||||||||||| |||| |
|
|
| T |
41080776 |
tttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcaattgattgtgagcaaggagatggtt |
41080850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 575
Target Start/End: Complemental strand, 4132306 - 4132149
Alignment:
| Q |
425 |
ttagtaatatgcttatcagaattggagctgcatg-------ggaccttaatttgcaacaatgagactttttattgaggcgtagaagatttgg-tttggaa |
516 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||||| ||| |||| |||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4132306 |
ttagtaatatacttatcagaattggagctacatgattcatgggacctcaatatgcagcaatgagactttttgttgaggcgtagaagatttggttttggaa |
4132207 |
T |
|
| Q |
517 |
ctgtattgatttatgaactactttcttatttttgctttgttcagaagtgtggtgtttct |
575 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
4132206 |
ctgtattggtttatgaactattttctagtttttgc-ttgtttggaagtgtggtgtttct |
4132149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University