View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16615_high_4 (Length: 543)
Name: NF16615_high_4
Description: NF16615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16615_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 509
Target Start/End: Original strand, 28155552 - 28156053
Alignment:
| Q |
13 |
agttactaccttacattatgtacttatttttgtttgcttgttgattcagttattgactgtttgtttaataatgtgtatgcagttttaacaatatagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28155552 |
agttactaccttacattatgtacttatttttgtttgcttgttcattcagttattgactgtttgtttaataatgtgtatgcagttttaacaatatagaaag |
28155651 |
T |
|
| Q |
113 |
caagaaatcatagagaaactcaaagaatggttatttttggtgtttggttactgggatgatttcacgtgagagttctgccacttgtgtccgtgagttttgc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28155652 |
caagaaatcatagagaaactcaaagaatggttatttttggtgtttggttactgggatgatttcacgtgagagttctgccac-tgtgtccgtgagttttgc |
28155750 |
T |
|
| Q |
213 |
aaaacctgaatgaacagaacagtttggagaaaccaacattaaacaaaccaaaccactttaaacacagtaagtgtatccattttcatggactcattgcctc |
312 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28155751 |
aaaacccgaat-----gaacagtttcgagaaaccaacatt-----aaccaaaccactttaaccacagtaagtgtctccattttcatggactcattgcctc |
28155840 |
T |
|
| Q |
313 |
ac----------------acaatgttctgctcaatgaatcaaaatgtgaagaagcaactaccaattgtagatctcaagagttaagtaggtgaatcaaatc |
396 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28155841 |
acatacacttccatgccaataatgttctgctcaatgaatcaaaatgtgaagaagcaactaccaattgtagatctcaagagttaagtaggtgaatcaaatc |
28155940 |
T |
|
| Q |
397 |
aacccctacccaaccacatgcattaaacaatttcgatatcttccacacaaattaacaatagcttattgttaacaaaaaccaaattagctacaacatacac |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28155941 |
aacccctacccaaccacatgcattaaacaatttcgatatcttccacacaaattaacaatagcttattgttaacaaaaaccaaattagcttaaacatacac |
28156040 |
T |
|
| Q |
497 |
ctaattactagct |
509 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28156041 |
ctaattactagct |
28156053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 531
Target Start/End: Original strand, 28156067 - 28156096
Alignment:
| Q |
502 |
tactagctctggtgttgttgggtccatttt |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28156067 |
tactagctctggtgttgttgggtccatttt |
28156096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University