View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16615_high_5 (Length: 341)
Name: NF16615_high_5
Description: NF16615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16615_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 10362990 - 10362666
Alignment:
| Q |
16 |
cattcataattacgtttctttagaacattgtttaatatttgcggtgctacattgaaacatattacattgacacactctctaatcatactnnnnnnnn--- |
112 |
Q |
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| T |
10362990 |
cattcataaatacgtttctttagaacattgtttaatatttgcggtgctacattgaaacatattacattgacacactctctaatcatactacaaaaaaata |
10362891 |
T |
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| Q |
113 |
--------tagactactaataaatttctgattgctgactccatatccgaaaggaaaagcacaattgaaacaatggtcnnnnnnnnattgaaacaattgaa |
204 |
Q |
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| T |
10362890 |
aaaataaatagactactaataaatttctgattgctgactccatatccgaaaggaaaagcacaattgaaacaatggtcttttttttattgaaacaattgaa |
10362791 |
T |
|
| Q |
205 |
acacactagtctattggtttttctcctttgaaattgaaatccaccctaaacaaaagtaatcttaatcaatgaattaatggtgcaccgtactttcttcttc |
304 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10362790 |
acac--tagtctattggtttttctcctttgaaattgaaatccaccctaaacaaaagtaatcttaatcaatgaattaatggtgcaccgtactttcttcttc |
10362693 |
T |
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| Q |
305 |
ctttttaatttaatagtagtagtataa |
331 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
10362692 |
ctttttaatttaatagtagtaatataa |
10362666 |
T |
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