View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16615_high_6 (Length: 309)
Name: NF16615_high_6
Description: NF16615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16615_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 36328247 - 36328548
Alignment:
| Q |
1 |
attctgtcactttcctcttccattgttgtcactcacgtattattataaccttttatggaaagtgaaattatcgataaactttgaaaaggattgttgtcac |
100 |
Q |
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| T |
36328247 |
attctgtcactttcctcttccattgttgtcactcacgtattattataaccttttatggaaagtgaaattatcgataaactttgaaaaggattgttgtcgc |
36328346 |
T |
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| Q |
101 |
tcac---------caccaacttnnnnnnngagagaatagtgaatggagaaacttgggcacgatttaggtcaatttaaagtatatgcgtggaacaaactat |
191 |
Q |
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| T |
36328347 |
tcacgtataacaccaccaacttaaaaaaagagagaatagtgaatgcagaaacttgggcacgatttttgtcaatttaaagtatatgcgtggaacaaactat |
36328446 |
T |
|
| Q |
192 |
ccctaaaattaatggtaacaaattaaacaaactacacttaatttgttacgatattatatacgtggccgcctattatttatctcatgggttattgagcata |
291 |
Q |
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| T |
36328447 |
ccctaaaattaatggtaacaaattaaacaaactatacttaatttgttacgatattatacacgtggccgcctattatttatctcatgggttattgagcata |
36328546 |
T |
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| Q |
292 |
tt |
293 |
Q |
| |
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|| |
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| T |
36328547 |
tt |
36328548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 36314142 - 36314182
Alignment:
| Q |
56 |
tggaaagtgaaattatcgataaactttgaaaaggattgttg |
96 |
Q |
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| T |
36314142 |
tggaaagtgaaattatcaataaacttttaaaaggattgttg |
36314182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 36334210 - 36334253
Alignment:
| Q |
56 |
tggaaagtgaaattatcgataaactttgaaaaggattgttgtca |
99 |
Q |
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|||||||||||| |||| ||||||||||||||||||| |||||| |
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| T |
36334210 |
tggaaagtgaaaatatcaataaactttgaaaaggattattgtca |
36334253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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