View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16615_low_12 (Length: 251)
Name: NF16615_low_12
Description: NF16615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16615_low_12 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 30761930 - 30761677
Alignment:
| Q |
1 |
taccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30761930 |
taccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgagggggttcaagacaatgaaaatatagtaaaataggt |
30761831 |
T |
|
| Q |
101 |
gtaaatatgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatgtgtctaatat-aaatcccgaca-nnnnnnngattaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30761830 |
gtaaatatgaaaagttgagaaggtgcaattgaaccccctggccacaacgtggctccgacaatgtgtctaatataaaatcccgacattttttttgattaaa |
30761731 |
T |
|
| Q |
198 |
ataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30761730 |
ataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgt |
30761677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 21139179 - 21139019
Alignment:
| Q |
3 |
ccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
21139179 |
ccaactttttcctagtgagagaggagagagtcgatgcaatatggtgcaaggcttaattttgagggggttcaagacaataaaaacatagtaagataggtgt |
21139080 |
T |
|
| Q |
103 |
aaatatgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatg |
162 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
21139079 |
aaatttgaatagttgagaaggtgcagttgaaccccctggccactacatggctccgccaatg |
21139019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 30749528 - 30749470
Alignment:
| Q |
191 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30749528 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagt |
30749470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 30770979 - 30770921
Alignment:
| Q |
191 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30770979 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagt |
30770921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 28444633 - 28444511
Alignment:
| Q |
41 |
atatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaacccctgg |
140 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
28444633 |
atatggtgcaaggttttattttgagggggttcaaaacactaaaaatatagtaaaataggtgtaaaattgaaaagttgagaaggtggagttgaacccctga |
28444534 |
T |
|
| Q |
141 |
ccacaacgtggctccgacaatgt |
163 |
Q |
| |
|
|||| | ||||||||| |||||| |
|
|
| T |
28444533 |
ccactatgtggctccgccaatgt |
28444511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University