View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16615_low_14 (Length: 247)

Name: NF16615_low_14
Description: NF16615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16615_low_14
NF16615_low_14
[»] chr3 (10 HSPs)
chr3 (18-233)||(36328055-36328270)
chr3 (71-232)||(36321276-36321437)
chr3 (18-179)||(36333894-36334055)
chr3 (69-233)||(36309764-36309927)
chr3 (60-202)||(36313859-36313998)
chr3 (70-172)||(30201147-30201249)
chr3 (161-202)||(36336750-36336791)
chr3 (71-103)||(29751894-29751926)
chr3 (69-168)||(30227326-30227425)
chr3 (69-103)||(30223140-30223174)
[»] chr5 (1 HSPs)
chr5 (80-202)||(16053597-16053719)
[»] chr1 (1 HSPs)
chr1 (62-104)||(16955661-16955703)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 36328055 - 36328270
Alignment:
Q  18 aaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcggggacactc 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36328055 aaatccacataagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgacaggatccttgcaaacgttccaccattgcggggacactc 36328154  T
Q  118 ggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtcaaatcaatcggaagatcaaaccaatttggcactgttattctgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36328155 ggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtcaaatcaatcggaagatcaaaccaatttggcactgttattctgtc 36328254  T
Q  218 actttcctcttccatt 233  Q
    ||||||||||||||||    
T  36328255 actttcctcttccatt 36328270  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 36321276 - 36321437
Alignment:
Q  71 ccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgct 170  Q
    ||||||||| ||||||||||||| |||| ||||||| ||| | |||||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||    
T  36321276 ccacatgagtggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaaggatgttttct 36321375  T
Q  171 gtcaaatcaatcggaagatcaaaccaatttggcactgttattctgtcactttcctcttccat 232  Q
    ||||||||| | |||||||||| |||||||||  ||||| | || |||||||||||||||||    
T  36321376 gtcaaatcacttggaagatcaagccaatttggtcctgttgtgctctcactttcctcttccat 36321437  T

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Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 36333894 - 36334055
Alignment:
Q  18 aaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcggggacactc 117  Q
    |||||||| ||||||  ||||||  ||||  || ||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||| ||  ||||||    
T  36333894 aaatccacataagcatagggtgatatacggatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccattgtggacacactc 36333993  T
Q  118 ggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtcaaatca 179  Q
    |||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  36333994 ggcaagcactcgtcacaatttccaacgtaccaagcctctgaaggatgtttgctgtcaaatca 36334055  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 36309764 - 36309927
Alignment:
Q  69 cgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg 168  Q
    |||||||| |||||||||||||||| |||||||||||||||  ||||||| ||||||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  36309764 cgccacattagaggatccttgcaaatgttccaccattgcggacacactcg-catgcactcgtcacaatttcaaacgcaccaagcctatgaaggatgtttg 36309862  T
Q  169 ctgtcaaatcaatcggaagatcaaaccaatttggcactgttattctgtcactttcctcttccatt 233  Q
    |||||||||| || |||||||||| |||||| ||| || || | || || |||||| ||||||||    
T  36309863 ctgtcaaatctataggaagatcaagccaattcggccctcttgtgctttccctttccacttccatt 36309927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 36313859 - 36313998
Alignment:
Q  60 cgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaa 159  Q
    |||||||| |||||||||||||||||||||||||  ||| ||||||| | | | || |  ||||||||| ||| ||||||||   |||||||||||||||    
T  36313859 cgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgcactcgtcacaatttcaa---taccaagcctctgaa 36313955  T
Q  160 ggatgtttgctgtcaaatcaatcggaagatcaaaccaatttgg 202  Q
    | |||||| ||||||||||| | |||||||||| |||||||||    
T  36313956 gaatgttttctgtcaaatcacttggaagatcaagccaatttgg 36313998  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 30201249 - 30201147
Alignment:
Q  70 gccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgc 169  Q
    |||||||||||||||||||||||| |||||||||| | ||  ||||| | ||||||||  ||| ||||||||  |||| |||||| ||||| |||||| |    
T  30201249 gccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaatgttttc 30201150  T
Q  170 tgt 172  Q
    |||    
T  30201149 tgt 30201147  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 36336750 - 36336791
Alignment:
Q  161 gatgtttgctgtcaaatcaatcggaagatcaaaccaatttgg 202  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  36336750 gatgtttgctgtcaaatcactcggaagatcaagccaatttgg 36336791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 29751926 - 29751894
Alignment:
Q  71 ccacatgagaggatccttgcaaacgttccacca 103  Q
    |||||||||||||||||||||||||||||||||    
T  29751926 ccacatgagaggatccttgcaaacgttccacca 29751894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 30227425 - 30227326
Alignment:
Q  69 cgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg 168  Q
    ||||||||||||||||||||||||| ||||||| || | ||  ||||| | ||||||||  ||| ||| || |  ||||||||||| ||||| |||||||    
T  30227425 cgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgtttg 30227326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 30223174 - 30223140
Alignment:
Q  69 cgccacatgagaggatccttgcaaacgttccacca 103  Q
    ||||||||||||||||||||||||| |||||||||    
T  30223174 cgccacatgagaggatccttgcaaatgttccacca 30223140  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 16053597 - 16053719
Alignment:
Q  80 aggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttgctgtcaaatca 179  Q
    |||||||||||||| |||||||||  | ||| |||||| |||||||||  | | ||||||||| | |||||||||||||||||| |||| |||||||||     
T  16053597 aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggatatttgatgtcaaatct 16053696  T
Q  180 atcggaagatcaaaccaatttgg 202  Q
     | |||||||||| |||||||||    
T  16053697 ctaggaagatcaagccaatttgg 16053719  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 16955661 - 16955703
Alignment:
Q  62 aatagttcgccacatgagaggatccttgcaaacgttccaccat 104  Q
    |||||| |||||||||||||||||||||||||  |||||||||    
T  16955661 aatagtgcgccacatgagaggatccttgcaaatattccaccat 16955703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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