View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16616_high_4 (Length: 293)
Name: NF16616_high_4
Description: NF16616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16616_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 1390956 - 1390700
Alignment:
| Q |
9 |
agcataggtgcagtttagcactttaagattacataacctcatagactacttgctccacagttaagattaagaaacaatcaaatttacgatataaaaagaa |
108 |
Q |
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| T |
1390956 |
agcataggtgcagtttagcactttaagattacataacctcatagactacttgctccacagttaagattaagaaacaaacaaatttacgatataaaaagaa |
1390857 |
T |
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| Q |
109 |
tagagaatactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagcaaacacggaagaaa |
208 |
Q |
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| T |
1390856 |
tagataatactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagcaaacacggaagaaa |
1390757 |
T |
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| Q |
209 |
cactggagacatttcctttaaaaagaaaaggaaattacaaacagaacaaatggagag |
265 |
Q |
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| T |
1390756 |
cactggagacatttcctttaaaaagaaaaggaaattacaaacagaacaaatggagag |
1390700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 1374572 - 1374411
Alignment:
| Q |
99 |
ataaaaagaatagagaatactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagcaaac |
198 |
Q |
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| T |
1374572 |
ataaaaacaatagataatattaatttgagaatcaatagaagtgccatttcatttatcaactcttatccatccatttgcattttaaaatccgaaaggtaaa |
1374473 |
T |
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| Q |
199 |
acggaagaaacactgga-gacatttcctt-taaaaagaaaaggaaattacaaacagaacaaat |
259 |
Q |
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| T |
1374472 |
actgaa-aaacacagtacgacatttccttaaaaaaataaaaggaaattacaaacagaacaaat |
1374411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 1358946 - 1358869
Alignment:
| Q |
116 |
tactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagc |
194 |
Q |
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| T |
1358946 |
tactaatttcagaatgaataaaagtaccatttcatttattaactcttatccatacatttgcattt-gaaatccgaaagc |
1358869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 1351072 - 1350995
Alignment:
| Q |
116 |
tactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagc |
194 |
Q |
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| T |
1351072 |
tactaacttgagaatgaa-aaaggtaccatttcatttattaactcttatccatacatttgcattttgaaatccgaaagc |
1350995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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