View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16616_low_2 (Length: 395)

Name: NF16616_low_2
Description: NF16616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16616_low_2
NF16616_low_2
[»] chr5 (30 HSPs)
chr5 (140-362)||(29870769-29870995)
chr5 (144-348)||(30434409-30434617)
chr5 (140-349)||(30481915-30482128)
chr5 (140-353)||(30243675-30243894)
chr5 (197-353)||(30339828-30339984)
chr5 (140-348)||(30748226-30748438)
chr5 (148-355)||(29851892-29852101)
chr5 (209-369)||(30398670-30398830)
chr5 (140-353)||(30058880-30059088)
chr5 (175-356)||(17419191-17419373)
chr5 (246-362)||(4380357-4380473)
chr5 (196-356)||(30678540-30678693)
chr5 (210-349)||(29710277-29710416)
chr5 (214-340)||(30205102-30205228)
chr5 (80-141)||(29851735-29851796)
chr5 (307-348)||(30482158-30482199)
chr5 (80-136)||(29870646-29870702)
chr5 (140-194)||(30340004-30340059)
chr5 (43-77)||(30714756-30714790)
chr5 (213-281)||(17981534-17981602)
chr5 (80-136)||(30058757-30058813)
chr5 (80-128)||(30481792-30481840)
chr5 (215-282)||(30202743-30202810)
chr5 (45-74)||(29870580-29870609)
chr5 (44-77)||(30678954-30678987)
chr5 (44-72)||(30244072-30244100)
chr5 (214-318)||(30246138-30246242)
chr5 (44-72)||(30434201-30434229)
chr5 (145-194)||(30678707-30678758)
chr5 (140-199)||(30714546-30714606)
[»] chr7 (1 HSPs)
chr7 (209-377)||(26705919-26706087)
[»] chr4 (6 HSPs)
chr4 (205-377)||(20298026-20298198)
chr4 (210-354)||(20303931-20304074)
chr4 (308-355)||(20297976-20298023)
chr4 (75-136)||(20298317-20298378)
chr4 (45-74)||(20298405-20298434)
chr4 (210-262)||(13615449-13615501)
[»] chr1 (1 HSPs)
chr1 (210-262)||(7098003-7098055)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 140 - 362
Target Start/End: Original strand, 29870769 - 29870995
Alignment:
Q  140 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 235  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||   ||   |||||| | || ||||||||||||||||||||||||    
T  29870769 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaactgtattattggaatatgagctatcttgtccc 29870868  T
Q  236 aatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaa 335  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||   |||||   |||||||||||| |||||||||||||||||||||||||||||    
T  29870869 aatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccctcaattgccagaagctcaagtgaagtgaggtgtcgaataccctccggcaa 29870968  T
Q  336 gcatcgcaatccttcacaattccaaat 362  Q
    |||||||||||||||||||||||||||    
T  29870969 gcatcgcaatccttcacaattccaaat 29870995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 144 - 348
Target Start/End: Original strand, 30434409 - 30434617
Alignment:
Q  144 gatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataacttaa---actctctttttggaatatgagctatcttgtcccaatc 239  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| |||||| |  | ||   ||||| || ||||||||||||||||||||||||||||    
T  30434409 gatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaaacatcaatcaactctattcttggaatatgagctatcttgtcccaatc 30434508  T
Q  240 ctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaagcat 339  Q
    ||| ||||||||||||||||||| ||||| |||||||||||||| |   |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30434509 ctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagctcaagagaagtgaggtgtcgaataccctccggcaagcat 30434608  T
Q  340 cgcaatcct 348  Q
    |||||||||    
T  30434609 cgcaatcct 30434617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 140 - 349
Target Start/End: Original strand, 30481915 - 30482128
Alignment:
Q  140 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 235  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||   ||   |||||| | |||||||||||||||||||||||||||    
T  30481915 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaactgtatttttggaatatgagctatcttgtccc 30482014  T
Q  236 aatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaa 335  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||| |    |||   ||||| ||||||||||||||||||||||||||||||||||||    
T  30482015 aatcctcccatgttccctctttgcatcgttcctctaatgttgggcattcccaaattgtcagaacctcaagagaagtgaggtgtcgaataccctccggcaa 30482114  T
Q  336 gcatcgcaatcctt 349  Q
    ||||||||||||||    
T  30482115 gcatcgcaatcctt 30482128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 140 - 353
Target Start/End: Complemental strand, 30243894 - 30243675
Alignment:
Q  140 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgt--ttcttataacttaaa---ctctctttttggaatatgagctatcttgtc 233  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||   |||||    || |||   | ||||||||||||||||||||||||||||    
T  30243894 aattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgcccttcttcattctaaaaaatcactctttttggaatatgagctatcttgtc 30243795  T
Q  234 ccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggc 333  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| || | || ||||  || || ||||||||||||||||||||||||||||||||||    
T  30243794 ccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagagaagtgaggtgtcgaataccctccggc 30243695  T
Q  334 aagcatcgcaatccttcaca 353  Q
    ||||||||||||||||||||    
T  30243694 aagcatcgcaatccttcaca 30243675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 197 - 353
Target Start/End: Complemental strand, 30339984 - 30339828
Alignment:
Q  197 acttaaactctctttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcag 296  Q
    ||||||||| | | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |   |||  |||    
T  30339984 acttaaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcag 30339885  T
Q  297 aagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcaca 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339884 aagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcaca 30339828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 140 - 348
Target Start/End: Original strand, 30748226 - 30748438
Alignment:
Q  140 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 235  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||||||||| ||||||   ||   |||||  | |||||||||||||||||||||||||||    
T  30748226 aattgaattttgcgattgtgattgaggcagataagggtaaacgtctctgcttcttaatcctctgtaaacagtatttttggaatatgagctatcttgtccc 30748325  T
Q  236 aatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaa 335  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||||| |   |||   |||||||||||||||||||||||||||||||||||||||||    
T  30748326 aatcctcccatgttccctctttgcatcgttcctctaatgttgggcaatcaatgatatcaagaagctcaagagaagtgaggtgtcgaataccctccggcaa 30748425  T
Q  336 gcatcgcaatcct 348  Q
    |||||||||||||    
T  30748426 gcatcgcaatcct 30748438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 148 - 355
Target Start/End: Original strand, 29851892 - 29852101
Alignment:
Q  148 tttgcgatggtgattgtggc-agata-gggtaaacgtctctgtttcttataacttaaactctctttttggaatatgagctatcttgtcccaatcctctcc 245  Q
    |||||||||||||||| ||| ||||| ||||||| ||||||| ||||||  | ||||||| | | ||||||||||||| |||||||||||||||||| |     
T  29851892 tttgcgatggtgattgaggccagataagggtaaatgtctctgcttcttaatagttaaactgtatatttggaatatgagatatcttgtcccaatcctcaca 29851991  T
Q  246 tgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaat 345  Q
    ||||||| ||||||||| ||||||||||||||||||||  | |||   |||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  29851992 tgttcccactttgcatcgttcctctaatgttgggcaatttttaattgacagaagctcaagagaagtgaggtgtccaataccctccggcaagcatctcaat 29852091  T
Q  346 ccttcacaat 355  Q
    |||| |||||    
T  29852092 cctttacaat 29852101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 209 - 369
Target Start/End: Original strand, 30398670 - 30398830
Alignment:
Q  209 tttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagaga 308  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||  ||   ||||| |||||||||    
T  30398670 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcagaacctcaagaga 30398769  T
Q  309 agtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaattccaaatatataga 369  Q
    ||||||||||| |||||||||||| |||||||||||| ||| ||||||  |||||||||||    
T  30398770 agtgaggtgtctaataccctccggaaagcatcgcaattctttacaattagaaatatataga 30398830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 140 - 353
Target Start/End: Original strand, 30058880 - 30059088
Alignment:
Q  140 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataacttaaactctctttttggaatatgagctatcttgtcccaat 238  Q
    ||||||||||||||||||| | || |||||||| ||||||||||||||| ||||||      ||||| | ||||||||||||||| ||||||||||||||    
T  30058880 aattgatttttgcgatggttaatgaggcagataagggtaaacgtctctgcttctta------aaactgtatttttggaatatgagatatcttgtcccaat 30058973  T
Q  239 cctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaagca 338  Q
    |||| ||||||| ||  ||||||| ||||| ||||||| |||||  |   |||  |||||||||||||||||||||||||||||||||||||||||| ||    
T  30058974 cctcccctgttcgcttcttgcatcgttcctttaatgttcggcaaccaatgatagtcagaagctcaagagaagtgaggtgtcgaataccctccggcaaaca 30059073  T
Q  339 tcgcaatccttcaca 353  Q
    |||||||||||||||    
T  30059074 tcgcaatccttcaca 30059088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 175 - 356
Target Start/End: Complemental strand, 17419373 - 17419191
Alignment:
Q  175 gtaaacgtctct-gtttcttataacttaaactctctttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaat 273  Q
    |||||||||||| | ||||||  |||| |||| | |||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||    
T  17419373 gtaaacgtctcttgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccctccttgcatcgttcctctaat 17419274  T
Q  274 gttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaatt 356  Q
    |||||| | | || |||   ||||| |||  |||||||||||||||||||||||||  ||||||||| ||| |||||||||||    
T  17419273 gttggggagtcataaatgttcagaaactcgggagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaatt 17419191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 4380357 - 4380473
Alignment:
Q  246 tgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaat 345  Q
    ||||||||||||||||| |||||||||||||||||||  |   || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4380357 tgttccctctttgcatcgttcctctaatgttgggcaaccaatgattctcagaacctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaat 4380456  T
Q  346 ccttcacaattccaaat 362  Q
    ||||  |||| ||||||    
T  4380457 cctttgcaatcccaaat 4380473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 356
Target Start/End: Complemental strand, 30678693 - 30678540
Alignment:
Q  196 aacttaaactctctttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttc-ctctaatgttgggcaataatcaatacgc 294  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| ||  ||||||||||||| | ||| | | |||||||| || | || ||||       
T  30678693 aacttaaactgtatttttggaatatgagctatcttgtcccaatcctcccccattccctctttgcacccttctcacaaatgttggacatttataaatat-- 30678596  T
Q  295 agaagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaatt 356  Q
          |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30678595 ------tcaagagatgtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaatt 30678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 349
Target Start/End: Complemental strand, 29710416 - 29710277
Alignment:
Q  210 ttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaa 309  Q
    |||||||| ||| |||||||||||| ||||||| | || |||||| ||||||| |||||||||||||| | ||| || || |  ||||| ||||||||||    
T  29710416 ttttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcatcgttcctctaatgttgagaaattataaaaatacagaacctcaagagaa 29710317  T
Q  310 gtgaggtgtcgaataccctccggcaagcatcgcaatcctt 349  Q
    |||||| |   |||||||||||| ||||||||||||||||    
T  29710316 gtgaggcgagcaataccctccggaaagcatcgcaatcctt 29710277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 30205102 - 30205228
Alignment:
Q  214 ggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtga 313  Q
    |||||||| | |||||||| ||| ||||||||||||||||| |||||||  || |||| |||||| |||  |  |||   ||||||||| ||||||||||    
T  30205102 ggaatatgcgatatcttgtaccagtcctctcctgttccctccttgcatcgctcttctagtgttggacaaccacgaattgtcagaagctccagagaagtga 30205201  T
Q  314 ggtgtcgaataccctccggcaagcatc 340  Q
    | ||||||||||| ||||| |||||||    
T  30205202 gatgtcgaataccttccggtaagcatc 30205228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 29851735 - 29851796
Alignment:
Q  80 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaatatataa 141  Q
    |||||| ||||||||||| ||  |||||||||| |||||||||||||||||| |||||||||    
T  29851735 atgtaccctggatctcttcctacggaatgggttacaaagaagtcaacaatgagaatatataa 29851796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 30482158 - 30482199
Alignment:
Q  307 gaagtgaggtgtcgaataccctccggcaagcatcgcaatcct 348  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  30482158 gaagtgaggtgtcgaataccctccggcaagcatctcaatcct 30482199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 29870646 - 29870702
Alignment:
Q  80 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 136  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||| ||||||| ||||    
T  29870646 atgtactctggatctcttcctgcggaatgggttccaaagatgtcgacaatgagaata 29870702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 30340059 - 30340004
Alignment:
Q  140 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttctta 194  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  30340059 aattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttctta 30340004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 30714790 - 30714756
Alignment:
Q  43 ttatgatgaagaaaattacctgaattagaacaatt 77  Q
    |||||||||||||||||||||||||||||||||||    
T  30714790 ttatgatgaagaaaattacctgaattagaacaatt 30714756  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 17981534 - 17981602
Alignment:
Q  213 tggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggca 281  Q
    ||||||||| |||||||||||||| || ||||| |||||||| |||||||  | ||| |||||||||||    
T  17981534 tggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttctccaatgttgggca 17981602  T

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Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 30058757 - 30058813
Alignment:
Q  80 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 136  Q
    |||||||||||||||||| |||  |||||||||||||||| ||| ||||||| ||||    
T  30058757 atgtactctggatctcttcctgcagaatgggttccaaagatgtcgacaatgagaata 30058813  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 30481792 - 30481840
Alignment:
Q  80 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaa 128  Q
    ||||| |||||||||||| ||| ||||||||||||||| ||||||||||    
T  30481792 atgtagtctggatctcttcctgcggaatgggttccaaataagtcaacaa 30481840  T

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Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 30202743 - 30202810
Alignment:
Q  215 gaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaa 282  Q
    ||||||| |||||||||||||| | ||| ||||||||||| ||||||| |||||  ||| ||||||||    
T  30202743 gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaa 30202810  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 29870580 - 29870609
Alignment:
Q  45 atgatgaagaaaattacctgaattagaaca 74  Q
    ||||||||||||||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaaca 29870609  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 30678987 - 30678954
Alignment:
Q  44 tatgatgaagaaaattacctgaattagaacaatt 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  30678987 tatgatgaagaaaattaccagaattagaacaatt 30678954  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 30244100 - 30244072
Alignment:
Q  44 tatgatgaagaaaattacctgaattagaa 72  Q
    |||||||||||||||||||||||||||||    
T  30244100 tatgatgaagaaaattacctgaattagaa 30244072  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 30246242 - 30246138
Alignment:
Q  214 ggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtga 313  Q
    |||||||||| ||||||||||| |||||| | |||  |||  |||||||  |||| |||||||||  ||| || ||||  ||||| ||| ||||||||||    
T  30246242 ggaatatgagatatcttgtcccgatcctcccatgtctccttcttgcatcgctcctttaatgttggagaatgatgaatattcagaacctcgagagaagtga 30246143  T
Q  314 ggtgt 318  Q
    |||||    
T  30246142 ggtgt 30246138  T

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Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 30434201 - 30434229
Alignment:
Q  44 tatgatgaagaaaattacctgaattagaa 72  Q
    |||||||||||||||||||||||||||||    
T  30434201 tatgatgaagaaaattacctgaattagaa 30434229  T

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Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 30678758 - 30678707
Alignment:
Q  145 atttttgcgatggtgattgtggcagat--agggtaaacgtctctgtttctta 194  Q
    ||||||||||||||||||  |||||||  |||||||||||||||| ||||||    
T  30678758 atttttgcgatggtgattaaggcagataaagggtaaacgtctctgcttctta 30678707  T

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Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 30714606 - 30714546
Alignment:
Q  140 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact 199  Q
    |||||||||||| |||||  | || |||||||| ||||||||||||||| |||||||||||    
T  30714606 aattgatttttgtgatggctaatgaggcagataagggtaaacgtctctgcttcttataact 30714546  T

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Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 209 - 377
Target Start/End: Original strand, 26705919 - 26706087
Alignment:
Q  209 tttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagaga 308  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||     ||| | ||||| |||||||||    
T  26705919 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactcaagaga 26706018  T
Q  309 agtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaattccaaatatatagagtcgtaag 377  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||| | ||||||| ||||    
T  26706019 agtgaggtgtcgaataccctctggcaagcatcgcattcctttacaatcccaaatctctagagtcctaag 26706087  T

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Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 377
Target Start/End: Complemental strand, 20298198 - 20298026
Alignment:
Q  205 tctctttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaa 304  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  || |||||| ||||||||| | |||  |||||||||||    
T  20298198 tctctttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaa 20298099  T
Q  305 gagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaattccaaatatatagagtcgtaag 377  Q
    |||||||||||||| |||| || || ||||||||| ||||||||||||||  |||||| | ||||||| ||||    
T  20298098 gagaagtgaggtgttgaatgccttctggcaagcattgcaatccttcacaaccccaaatctttagagtcctaag 20298026  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 354
Target Start/End: Complemental strand, 20304074 - 20303931
Alignment:
Q  210 ttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatctttcctctaatgttgggcaataatcaatacgcagaagctcaagagaa 309  Q
    |||||||||||| |||||||||||| ||||||| |||||||||   ||||| | ||||| |||||||||||| | || ||||| || || |||||| |||    
T  20304074 ttttggaatatgcgctatcttgtcc-aatcctcgcctgttcccgtcttgcaccgttcctttaatgttgggcattcataaatactcaaaacctcaagtgaa 20303976  T
Q  310 gtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaa 354  Q
    ||||||  ||||||||| || |||||||||| |||||||| ||||    
T  20303975 gtgaggaatcgaataccttcaggcaagcatctcaatcctttacaa 20303931  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 20298023 - 20297976
Alignment:
Q  308 aagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaat 355  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  20298023 aagtgaggtgttgaataccctccggcaagcattgcaatcctttacaat 20297976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 20298378 - 20298317
Alignment:
Q  75 attttatgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 136  Q
    |||| |||||||||||||||||||||   ||| |||||||||||||||||||| ||| ||||    
T  20298378 atttcatgtactctggatctctttctacagaacgggttccaaagaagtcaacattgagaata 20298317  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 20298434 - 20298405
Alignment:
Q  45 atgatgaagaaaattacctgaattagaaca 74  Q
    ||||||||||||||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaaca 20298405  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 13615449 - 13615501
Alignment:
Q  210 ttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatc 262  Q
    |||||||||||| |||||||||||||| || || | ||||||||| |||||||    
T  13615449 ttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatc 13615501  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 7098003 - 7098055
Alignment:
Q  210 ttttggaatatgagctatcttgtcccaatcctctcctgttccctctttgcatc 262  Q
    |||||||||||| |||||||||||||| || || ||||||||||| |||||||    
T  7098003 ttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatc 7098055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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