View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16616_low_3 (Length: 391)
Name: NF16616_low_3
Description: NF16616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16616_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 376
Target Start/End: Original strand, 2351374 - 2351745
Alignment:
| Q |
5 |
ttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtggtga |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351374 |
ttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtggtga |
2351473 |
T |
|
| Q |
105 |
tgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtgtt------gtaactaaaacnnnnnnnntccctcaaacgaaaaatacatagt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
2351474 |
tgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtggtttatgtgtaactaaaacaaaaaaaaaacctcaaacgaaaaatacatagt |
2351573 |
T |
|
| Q |
199 |
taatcaattgatcactcatagttaatccttacccttcttcgattcgctcgctccttataggtcacttcatgttcaaatgaaataaaataattcgacagag |
298 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351574 |
taatcaattaatcactcatagttaatccttacccttcttcgattcgctc----cttataggtcacttcatgttcaaatgaaataaaataattcgacagag |
2351669 |
T |
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| Q |
299 |
agtctaacctcactgtcaaatttcccgacttatctcagtctacaatttcggtttcaacagaaatttgccagcaatatt |
376 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2351670 |
--tctaacctcactgtcaagtttcccaacttatctcagtctacaatttcagtttcaacagaaatttgccagcaatatt |
2351745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2310512 - 2310665
Alignment:
| Q |
1 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtg |
100 |
Q |
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| T |
2310512 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgttgatttgacggaaatacaagaattcactatg |
2310611 |
T |
|
| Q |
101 |
gtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtgt |
154 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |
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| T |
2310612 |
gtgatgaaaaatccagtgcaagttcatatttctcctaggatatagattatgtgt |
2310665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2294181 - 2294334
Alignment:
| Q |
1 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||| || |
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| T |
2294181 |
ccatttggaatattttgtggctaacttggtttggaatttcgattggaaggttccagagggcgggcatgttgatttgacggaaatacaagaattcaccatg |
2294280 |
T |
|
| Q |
101 |
gtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtgt |
154 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
2294281 |
gtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgtgt |
2294334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 2303794 - 2303945
Alignment:
| Q |
1 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtg |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||||||||| | || |
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| T |
2303794 |
ccatttagaatattttgtggctaatttggtttggaatttcgattggaagcttccagagggcggctatgttgatttgtcggaaaaacaagaattcaatatg |
2303893 |
T |
|
| Q |
101 |
gtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgt |
152 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
2303894 |
gtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgt |
2303945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2321496 - 2321649
Alignment:
| Q |
1 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtg |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||||| || |||| || ||||| ||||||||||||||||||||| | ||||||||| || |
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| T |
2321496 |
ccatttggaatattttgtggctaacttggtttggaatttcaattggcagcttccggagggtggccatgttgatttgtcggaaaaagatgaattcactatg |
2321595 |
T |
|
| Q |
101 |
gtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtgt |
154 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
2321596 |
gtgatgaaaaatccattgcaagttcatatttctcctagggtatagattatgtgt |
2321649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 2327349 - 2327502
Alignment:
| Q |
1 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||||| |||||||| ||| |
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| T |
2327349 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccggagggtggccatgtcgatttgtcagaaaaatttgaattcaccgtg |
2327448 |
T |
|
| Q |
101 |
gtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtgt |
154 |
Q |
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||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |
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| T |
2327449 |
gtgatgaaaaatccattgcaagttcatatttctcatagaatatagattatgtgt |
2327502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 2331065 - 2331204
Alignment:
| Q |
2 |
catttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtgg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||| || ||||| ||||||||| ||| |
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| T |
2331065 |
catttggaatattttgtggctaatttggtttggaatttcgattggaaggttcccgagggtggtcgcgttgatttgtcagagaaacaggaattcactatgg |
2331164 |
T |
|
| Q |
102 |
tgatgaaaaatccattgcaagttcgtatttctcctaggat |
141 |
Q |
| |
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| ||||||||||||||||| | || ||||||||| ||||| |
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| T |
2331165 |
tcatgaaaaatccattgcaggctcatatttctccaaggat |
2331204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 41127376 - 41127519
Alignment:
| Q |
1 |
ccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaagg---tgggcatgttgatttgtcggaaaaacaagaattcact |
97 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||||| |||||||| ||| ||| || ||| |||||||||||||||||||| |||||||| |
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| T |
41127376 |
ccatttggaatactttgtggctaatttggtctggaattttaattggaagattctagagggagctggttatgttgatttgtcggaaaaaactgaattcacc |
41127475 |
T |
|
| Q |
98 |
gtggtgatgaaaaatccattgcaagttcgtatttctcctaggat |
141 |
Q |
| |
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||||| |||||||||||| ||||||||| ||||||||||||||| |
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| T |
41127476 |
gtggttatgaaaaatccactgcaagttcatatttctcctaggat |
41127519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 26507056 - 26507131
Alignment:
| Q |
66 |
atgttgatttgtcggaaaaacaagaattcactgtggtgatgaaaaatccattgcaagttcgtatttctcctaggat |
141 |
Q |
| |
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||||||||||||| |||||||| ||||| ||| ||||||||||| |||||||| ||| || || ||||||||||| |
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| T |
26507056 |
atgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatccattggaagctcaaatatctcctaggat |
26507131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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