View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16616_low_6 (Length: 218)
Name: NF16616_low_6
Description: NF16616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16616_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 42741909 - 42742110
Alignment:
| Q |
1 |
ccctttttcttgaagtttagtctcttagggttcaccgaaactacaagttctgcgggtgcttggatatgcactctatacttgcttggagacccgacattgg |
100 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741909 |
ccctttttcttgaaatttagtctcctagggttcactgaaactagaaattctacgggtgcttggatatgcactctatacttgcttggagacccgacattgg |
42742008 |
T |
|
| Q |
101 |
ttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42742009 |
ttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagt |
42742108 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
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|
| T |
42742109 |
gt |
42742110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 42760730 - 42760931
Alignment:
| Q |
1 |
ccctttttcttgaagtttagtctcttagggttcaccgaaactacaagttctgcgggtgcttggatatgcactctatacttgcttggagacccgacattgg |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42760730 |
ccctttttcttgaagtttagtctcctagggttcactgaaactagaagttctgcgggtgcttggataagcactctatacttgcttggagacccgacattgg |
42760829 |
T |
|
| Q |
101 |
ttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagt |
200 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42760830 |
ttacagtgcgagtaacgttcaaaggctgtccaattttaatgtcaggaactgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagt |
42760929 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
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|
| T |
42760930 |
gt |
42760931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 42751268 - 42751469
Alignment:
| Q |
1 |
ccctttttcttgaagtttagtctcttagggttcaccgaaactacaagttctgcgggtgcttggatatgcactctatacttgcttggagacccgacattgg |
100 |
Q |
| |
|
||||||||||| || ||||||||| |||| | ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42751268 |
ccctttttcttaaaatttagtctcctaggctccactgaaactagaaattctgcgggtgcttggatatgcactctatacttgcttggagacccgacattgg |
42751367 |
T |
|
| Q |
101 |
ttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42751368 |
ttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagt |
42751467 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
42751468 |
gt |
42751469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 200
Target Start/End: Complemental strand, 42736735 - 42736583
Alignment:
| Q |
48 |
ttctgcgggtgcttggatatgcactctatacttgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcagga |
147 |
Q |
| |
|
||||| ||||||||||| | |||||||| | ||||| || || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
42736735 |
ttctgggggtgcttggacgcgaactctataagtacttggggagccaacattggttacagtacgagtaacattcaaagagtgtccaattttaaagtcagga |
42736636 |
T |
|
| Q |
148 |
attgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| ||||| |||||||| |
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|
| T |
42736635 |
attgtgatggctggataattgaaatctattatattgaaagattttggacaagt |
42736583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 42715071 - 42715193
Alignment:
| Q |
80 |
tgcttggagacccgacattggttacagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaa |
179 |
Q |
| |
|
||||||||||||| || || || | |||||||||||| || | || ||||| | ||||||||| |||||||||| |||||||| |||||||| | || |
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| T |
42715071 |
tgcttggagaccccacgtttgtaagagtacgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaa |
42715170 |
T |
|
| Q |
180 |
attgaaggatttgggacaagtgt |
202 |
Q |
| |
|
|||||||||||| |||||||||| |
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| T |
42715171 |
attgaaggattttggacaagtgt |
42715193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 23042587 - 23042389
Alignment:
| Q |
4 |
tttttcttgaagtttagtctcttagggttcaccgaaactacaagttctgcgggtgcttggatatgcactctatacttgcttggagacccgacattggtta |
103 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||| || | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23042587 |
tttttcttaaaatttagtctgttaggcttcactgaaactagaaatcctgtgggtgcttggatatgcactctatacctgcttggagacccgacattggtta |
23042488 |
T |
|
| Q |
104 |
cagtacgagtaacgttcaaaggctgtccaattttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23042487 |
cagtacgagtaacgttcaaaggctgtccaattttaaagttcggaactatgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgt |
23042389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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