View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16617_low_1 (Length: 399)
Name: NF16617_low_1
Description: NF16617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16617_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 163 - 399
Target Start/End: Original strand, 34899335 - 34899571
Alignment:
| Q |
163 |
atcagaagagtcttgctcaattttaaaaatcagggctatacaattcatcaatgaannnnnnnncccttttgttttgacacttctctaattgtttcttgtg |
262 |
Q |
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| T |
34899335 |
atcagaagagtcttgctcaattctaaaaatcagggctatacaattcatcaatgaattttttttcccttttgttttgacacttctctaattgtttcttgtg |
34899434 |
T |
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| Q |
263 |
gtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacnnnnnnnntctatgaaga |
362 |
Q |
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| T |
34899435 |
gtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacaaaaaaaatctatgaaga |
34899534 |
T |
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| Q |
363 |
agtgtctgctaagacttacaaataattagttggtagc |
399 |
Q |
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| T |
34899535 |
agtgtctgctaagacttacaaataattagttggtagc |
34899571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34899173 - 34899294
Alignment:
| Q |
1 |
aaaaatcacatagttgccgaacatcgtttaataaaaataaaatggctctacatttataaaatttcaacataagtttacagatacgtttattttaaccttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34899173 |
aaaaatcacatagttgccgaacatcgtttaataaaaatagaatggttctacatttataaaatttcaacataagtttacagatacgtttattttaacctcg |
34899272 |
T |
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| Q |
101 |
taaaaaactagttattatagta |
122 |
Q |
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| T |
34899273 |
taaaaaactggttattatagta |
34899294 |
T |
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