View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16617_low_3 (Length: 250)
Name: NF16617_low_3
Description: NF16617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16617_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 39583777 - 39584016
Alignment:
| Q |
12 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactnnnnnnn-gtgaaatcccaccgttgaga |
110 |
Q |
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| T |
39583777 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactaaaaaaaagtgaaatcccaccattgaga |
39583876 |
T |
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| Q |
111 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttctttctcttacatgttttcatcaacttttagataaaccttgttga |
210 |
Q |
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| T |
39583877 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttccttctcttacatgttttcatcaacttttagataaaccttgttga |
39583976 |
T |
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| Q |
211 |
tgacatttgaacgagctttacacatggcctccaagggaat |
250 |
Q |
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| T |
39583977 |
tgacatttgaacgagctttacacatggcctccaagggaat |
39584016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 39572566 - 39572640
Alignment:
| Q |
176 |
catgttttcatcaacttttagataaaccttgttgatgacatttgaacgagctttacacatggcctccaagggaat |
250 |
Q |
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| T |
39572566 |
catgttttcaccggcttttagaaaaaccttgttgatgacatttgagcgagctatacacatggcctctaagggaat |
39572640 |
T |
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