View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16618_high_11 (Length: 435)
Name: NF16618_high_11
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_11 |
 | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 431
Target Start/End: Complemental strand, 13272081 - 13271666
Alignment:
| Q |
16 |
tcttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaa |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13272081 |
tcttcaacttgggacaatgcgttatacaaagctcttgaagcaatgggaaaccttcaagacataaccattccttccattcagacatatgctcaacccgcaa |
13271982 |
T |
|
| Q |
116 |
attttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttg |
215 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
13271981 |
agtttcaagggatctaaatggaacatttgatggattatagccgcaaaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcg |
13271882 |
T |
|
| Q |
216 |
agagaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaat |
315 |
Q |
| |
|
|||||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13271881 |
agagaaggcaactgcccaagtggtggcaactgggaacagagtttacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaat |
13271782 |
T |
|
| Q |
316 |
ttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctga |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||| ||||||| |||||||||| || | |
|
|
| T |
13271781 |
ttggaaagctactacctctgtagtcattgatggtgagtctcatgaggtgtctatttggttgaagagcttccaagaccgagacacgtgcttcagttactaa |
13271682 |
T |
|
| Q |
416 |
gccattcatctctctc |
431 |
Q |
| |
|
||||| ||| |||||| |
|
|
| T |
13271681 |
gccatccatttctctc |
13271666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 6140789 - 6141202
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6140789 |
ttcaacttgggacattgttttagacaaagctcttgaagcaaagggaaaccttcaaggcataaccattccttccattcagacatatactcaacccgcaaag |
6140888 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6140889 |
tttcaagggatctaaatgcaacatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgag |
6140988 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6140989 |
agaagggaactgcccaagtggtggcaactgggaacagtgtgtacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaatta |
6141088 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgagc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| |||||| |
|
|
| T |
6141089 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagc |
6141188 |
T |
|
| Q |
418 |
cattcatctctctc |
431 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
6141189 |
catccatttctctc |
6141202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 6257705 - 6258118
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6257705 |
ttcaacttgggacattgttttagacaaagctcttgaagcagagggaaaccttcaaggcataaccattccttccattcagacatatactcaacccgcaaag |
6257804 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
6257805 |
tttcaagggatctaaatgcaacatttgatgaattatagccgcaaaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgag |
6257904 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||||||||| | |||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||| | ||||| | ||||||||||||||||| |
|
|
| T |
6257905 |
agaagggaacttcccaagtggtggcaactgggaacaatgtttacatcccactaattcaagagatactaaatttggtagattaagatccccaagccaattt |
6258004 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgagc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
6258005 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattaggttgaagagcctccaagaccgatacacgtgcttcagtttctgagc |
6258104 |
T |
|
| Q |
418 |
cattcatctctctc |
431 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
6258105 |
catccatttctctc |
6258118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 6167400 - 6167807
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
6167400 |
ttcaacttgggacattgttttagacaaagctcttgaagcaaagggaaaccttcaaggcataaccattccttccattcagacatatactccacccgcaaag |
6167499 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| ||||||||||||| | ||| ||||||||||| ||||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
6167500 |
tttcaagggatctaaatgcagcat------aattatagccgaaaaactctgaaccaatgttctctattccatgacagccggaaatggaaagcttcttgag |
6167593 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
|||| |||| |||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6167594 |
agaatggaactgcccaagtggtggcaactgggaacagtgtttacatccaaacaattcaagagatactaaattgggtagatgatgatccccaagccaattt |
6167693 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgagc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
6167694 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgagatttctatttggttgaagagcctccaagaccaagagacgtgcttcagtttctgagc |
6167793 |
T |
|
| Q |
418 |
cattcatctctctc |
431 |
Q |
| |
|
| | ||| |||||| |
|
|
| T |
6167794 |
cttccatttctctc |
6167807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 6264185 - 6264601
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
||||| ||||||||||| |||| | ||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||| | || | | |||| |
|
|
| T |
6264185 |
ttcaatttgggacaatgatttagagaaagctctttaactaaagggaaaccatcaagacataaccattccttccattcagacatgttcttgaaacacaaag |
6264284 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6264285 |
tttcaagggatctaaatggaacatttgctgaattatagcggcaaaactctgaaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
6264384 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggcta---gatgatgatccccaagccaa |
314 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
6264385 |
agaagggaactgcccaagtggtggcaactgggaacagtgtgtacatcccaacaattcaagagataataaattggctagatgatgatgatccccaagccaa |
6264484 |
T |
|
| Q |
315 |
tttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctg |
414 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||| | |||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
6264485 |
ttaggaaagctactacctctgtagtcattgatgctgagcctcgtgagatttctatttggtcgcagagcctccaagaccgagaaacatgcttcagttactg |
6264584 |
T |
|
| Q |
415 |
agccattcatctctctc |
431 |
Q |
| |
|
|||||| ||| |||||| |
|
|
| T |
6264585 |
agccatccatttctctc |
6264601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 6723605 - 6723199
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
6723605 |
ttcaacttgggacaatgttttatacaaagctcttgtagcaaagggaaaccttcaagacataaccattccttccattcagacatttgctcaaatcgcaaag |
6723506 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|| | |||||||||||||||||| |||| | |||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||| ||| |
|
|
| T |
6723505 |
ttacaagggatctaaatggaacacttgaagcattatagccgcaaaactctgttccaatggtctctattccatcacagcctgaaatggaaagcttctcgag |
6723406 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
| | ||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||| ||||| ||||||| |
|
|
| T |
6723405 |
aaaggggaactgcccaagtggtggtaactgggaacagaatttacatcccaacaattcaagagatactaaattgggtaaatgacgatacccaacccaattt |
6723306 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgagc |
417 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||||| |||| |||| | |
|
|
| T |
6723305 |
ggaaagctactgcctccatagtctttgatggtgagcctcatgaggtttttatttggttgaagagcctccaagacagagacatctgctttagttactgatc |
6723206 |
T |
|
| Q |
418 |
cattcat |
424 |
Q |
| |
|
||||||| |
|
|
| T |
6723205 |
cattcat |
6723199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 6236228 - 6236626
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| |||||||||||| || |||||||||| |||||||||||||||| | || || | ||| |
|
|
| T |
6236228 |
ttcaacttgggacaatgttttatacaaagctctttaagaaaagggaaacctccacgacataaccataccttccattcagacatgttcttaaaacacaatg |
6236327 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6236328 |
tttcaagggatctaaatggaacatttgatgaattatagccgcaaaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgag |
6236427 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6236428 |
agaagggaactgcccaagtggtggcaactgggaacaatatttacatcccaacaattcaagagatactaaattgggtagatgatgatccccaagccaatta |
6236527 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||| ||||| |||| ||||| |
|
|
| T |
6236528 |
ggaaagctactacctctgtagtcattgatgccgagcctcatgagatttctatttggtcgaagagcctccaagatcgagacacgtgctttagttactgag |
6236626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 7748505 - 7748918
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
7748505 |
ttcaacttcggacaatgttttatacaaagctctcgaagcaaagggaaacattcaagacataaccattccttccattctgacatgtgctcaaatcgcaaag |
7748604 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| || |||||||||| ||||||||||||||||||||| |||| ||||| |||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
7748605 |
tttcaagagatctaaatgaaacatttgatgaattatagccacaaatctctgcaccaataatctctattccatcgcagcctgaaatggaaagcttcttgag |
7748704 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||| |||| |||||||||| | | ||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||| ||| |||||||||||| |
|
|
| T |
7748705 |
agagtggaactgcccaagtgatggtaactgggaacaaagtttacatcccaacaattcaagagtaactaaattgggtaaatgataatcgccaagccaattt |
7748804 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgagc |
417 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||| |||||||||| |||| | |
|
|
| T |
7748805 |
ggaaagctactgcctctgtagtctttgatggttagcctcatgaggtttctatttggttggagagcctctaagacagagacatgtgcttcagttactgatc |
7748904 |
T |
|
| Q |
418 |
cattcatctctctc |
431 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
7748905 |
catccatttctctc |
7748918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 6898591 - 6898993
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
6898591 |
ttcaacttcggacaatgtttgatacaaagctcttgaagcaaatgaaaacattcaagacataaccattccttccattcagacatgtgctcaaatcgcaaag |
6898690 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||||| |||| ||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
6898691 |
tttcaagggatctaaatggatcatttgatgaattgtagccacaaatctctgtaccaatgatatctattccatcacagcctgaaatggaaagcttcttgag |
6898790 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||| || || ||||||||||| | |||||||||| |||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
6898791 |
agagggtaactgcccaagtgggggcaactgggaacgaagtttacatcccaacaattctagagatactaaattgggtaaatgatgaaccccaagccaattt |
6898890 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgagc |
417 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||| ||||| ||||||| ||||| |||| |||| | |
|
|
| T |
6898891 |
ggaaatctactgcctctgtagtctttgatggttagcctcatgaggtttatatttggttgaagagcctctaagacagagacacgtgctttagttactgatc |
6898990 |
T |
|
| Q |
418 |
cat |
420 |
Q |
| |
|
||| |
|
|
| T |
6898991 |
cat |
6898993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 6592879 - 6592517
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
6592879 |
ttcaacttgggacaatgttttatacaaagctcttgaagcaaagggaaaccttcaagacataaccattccttccattcagacatgttctcaaatcgcaatg |
6592780 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
6592779 |
tttcaaggaatctaaatggaacatttgatgaattatagccgtaaaattctgtaccaatgatctctattccatcacagcctgaaaaggaaagcttcttgag |
6592680 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||| ||||| |||||||||||| | || | |||| || ||||||||||||||||||||| |||||||| |||| || || | |||| |||||||||||| |
|
|
| T |
6592679 |
agaggggaactgcccaagtggtggcaattcggaatggaatttacatcccaacaattcaagggatactaacttgggtaaataaagatcgccaagccaattt |
6592580 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaaga |
380 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6592579 |
ggaaagcttctgcctctgtagtctttgatggtgagcctcatgaggtttctatttggttgaaga |
6592517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 6915604 - 6915976
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
6915604 |
ttcaacttgggacaatgttttatacaaagctcttgaagcaaagggaaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaag |
6915703 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| |||||| |||||| ||||||||||||||| ||||| | ||||||| ||||||||| |||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
6915704 |
tttcaagggatttaaatgaaacatttgatgaattgtagccatagaactctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgag |
6915803 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||| ||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||| | || ||||| ||| |||||||||| | |
|
|
| T |
6915804 |
agaggggaactgcccaagtggcggcaactgggaacggagtttacatcccaacaattcaagagatactaaatttggtaaatgataatctccaagccaatat |
6915903 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaaga |
390 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6915904 |
ggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttggttgaagagcctccaaga |
6915976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 6881019 - 6881432
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||| |||||| |
|
|
| T |
6881019 |
ttcaacttgggacaatgttttatacaaagcttttgaagcaaagggaaaccttcaagacataaccattccttccattcagccatgttttcaaatcgcaaag |
6881118 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||| || |||| ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
6881119 |
tttcaagggatctaaatggaacatctgatgaattatagccgagaaactctgtaccaataatttctattccatcacagcttgaaatggaacacttcttgag |
6881218 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||| || || |||||||| ||| | ||||||||| || ||||||||||||||||||||||||||||||||| | || |||| ||||||||||||| ||| |
|
|
| T |
6881219 |
agagggaaactgcccaagcggtggcaactgggaatggattttacatcccaacaattcaagagatactaaatttggtaaatgacgatccccaagccagttt |
6881318 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagacacatgcttcagtttctgagc |
417 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| || ||| |||||||| |||| |||||||||||||||||||| ||| | |||||||||| |||| | |
|
|
| T |
6881319 |
ggaaagctaccgcctctgtagtctttgatggttagactcgtgaggtttatatttggttgaagagcctccaagacagaggcttgtgcttcagttactgatc |
6881418 |
T |
|
| Q |
418 |
cattcatctctctc |
431 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
6881419 |
catccatttctctc |
6881432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 6850804 - 6850427
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||| ||| ||| |||||| |
|
|
| T |
6850804 |
ttcaacttcggacaatgttttatacaaagctcttgaagtaaagggaaaccttcaagggata-ccattccttccactcagacatgtgcccaaatcgcaaag |
6850706 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
6850705 |
tttcaagggatttaaatggaacatttgatgaattgtagccgtaaaactctggaccaatgatctctattccatcacagcctgaaatggaaagattcttgag |
6850606 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaattt |
317 |
Q |
| |
|
||| ||||| ||||||||| | ||||||||||| | |||||||||||||||| ||||||||||||||||||| || ||||| |||||| ||||||| | |
|
|
| T |
6850605 |
agaggggaacagcccaagtgatggaaactgggaatggtgtttacatcccaacaa-tcaagagatactaaattgggtaaatgataatccccgagccaatat |
6850507 |
T |
|
| Q |
318 |
ggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggagac |
397 |
Q |
| |
|
|| |||||||| |||| |||||| |||||||| |||||||||||||||| ||| ||||||||||| |||||||| ||||| |
|
|
| T |
6850506 |
gggaagctactgcctcggtagtctttgatggttagcctcatgaggtttccatttggttgaagagcttccaagacagagac |
6850427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 6243820 - 6244073
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||| ||||| ||||||| |
|
|
| T |
6243820 |
ttcaacttgggacagtatcttattgaaagctctttcagcaaagggaaaccttcaatacataaccaatctttccattcagacatattctcaaaccgcaaag |
6243919 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6243920 |
tttcaagggatctaaatgtaaaatttgatgaattatagcggcaaaactctgaaccaatgatacctattccatgacagcctgaaatggaaagcttcttgag |
6244019 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaa |
271 |
Q |
| |
|
||| ||||| ||| || | || | |||| |||||||||||||||||||||||| |
|
|
| T |
6244020 |
agatgggaactgcttaatttgtggcaacttggaacagagtttacatcccaacaa |
6244073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 6244074 - 6244194
Alignment:
| Q |
296 |
atgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagacggag |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| ||| |
|
|
| T |
6244074 |
atgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcacgaggttactatttggttgaagagcctccaagatagag |
6244173 |
T |
|
| Q |
396 |
acacatgcttcagtttctgag |
416 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
6244174 |
acatgtgcttcagtttctgag |
6244194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 391
Target Start/End: Original strand, 5279276 - 5279535
Alignment:
| Q |
132 |
aatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaattgcc |
231 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| ||| || ||||||| ||||| ||| ||||||| ||||||| ||| ||||| || | |||| |
|
|
| T |
5279276 |
aatggaacagttgatgaattatagccataaaactcttcaccgataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcc |
5279375 |
T |
|
| Q |
232 |
caagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaatttggaaagctactacc |
331 |
Q |
| |
|
|||||||| |||||||| |||| | | ||||| || |||||| |||||||||||| || || | ||||||||||||| |||||||| | | || |
|
|
| T |
5279376 |
caagtggtggaaactggaaacaaaatccacatctattcagttcaagggatactaaattgagtaaataacagtccccaagccaatgtggaaagccagtgcc |
5279475 |
T |
|
| Q |
332 |
tctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagac |
391 |
Q |
| |
|
||||||||| | |||| |||| || ||||||| ||||| |||| ||| |||||||||| |
|
|
| T |
5279476 |
tctgtagtcctcgatgatgagactattgaggttgctatttggttcgagaacctccaagac |
5279535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 5297275 - 5297438
Alignment:
| Q |
45 |
agctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaattttcgagggatctaaatggaacatttg |
144 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||| || |||||||||||||| | ||||| |||||| || ||||||| || || | |||||||| |
|
|
| T |
5297275 |
agctctttcagcaaagggaaacctgtaacacataaccaatctttccattcagacattttctcaaatcgcaaaattgcgagggacctgaacgcaacatttg |
5297374 |
T |
|
| Q |
145 |
atgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaag |
208 |
Q |
| |
|
|||| || | ||| |||||||| |||||| |||||| |||||| ||||||||||| ||||| |
|
|
| T |
5297375 |
atgagttgtttccgtaaaactctttgccaatgctctctattccatggcagcctgaaattgaaag |
5297438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 4390423 - 4390320
Alignment:
| Q |
38 |
tatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaattttcgagggatctaaatgga |
137 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| | ||||| |||||| |||| ||| | || |||||| |
|
|
| T |
4390423 |
tatagaaagctctttaagcaaagggaaaccttcaacacataaccattccttccaattggacatgtcctcaaatcgcaaaatttcaaggaacctgaatgga |
4390324 |
T |
|
| Q |
138 |
acat |
141 |
Q |
| |
|
|||| |
|
|
| T |
4390323 |
acat |
4390320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 339
Target Start/End: Complemental strand, 6555866 - 6555659
Alignment:
| Q |
132 |
aatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaattgcc |
231 |
Q |
| |
|
||||||||| ||| |||||||| ||| |||||||| | ||||||||| || ||| | |||| | |||||||||| |||||||||||||||| ||| | |
|
|
| T |
6555866 |
aatggaacaattgttgaattattgccataaaactcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtc |
6555767 |
T |
|
| Q |
232 |
caagtggtagaaactgggaacagagtttacatcccaacaattcaagagatactaaattggctagatgatgatccccaagccaatttggaaagctactacc |
331 |
Q |
| |
|
|||||| | | || |||||| | ||||| ||| | ||||||||||||||| |||| || |||| | ||| |||||||||||||| |||||||| |
|
|
| T |
6555766 |
caagtgttggcaaacaggaacataacttacaacccttaagttcaagagatactaagttgggtaaatgacaaccccttagccaatttggaaatctactacc |
6555667 |
T |
|
| Q |
332 |
tctgtagt |
339 |
Q |
| |
|
| |||||| |
|
|
| T |
6555666 |
tttgtagt |
6555659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 5266602 - 5266655
Alignment:
| Q |
38 |
tatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttcca |
91 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
5266602 |
tataaaaagctcttcaagcaaagggaaactttcaacacataaccattccttcca |
5266655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 5262399 - 5262478
Alignment:
| Q |
131 |
aaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagct |
210 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||| |||||||||| ||||| ||| ||||||| ||||||| |
|
|
| T |
5262399 |
aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagct |
5262478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 7586371 - 7586606
Alignment:
| Q |
18 |
ttcaacttgggacaatgctttatacaaagctcttgaagcaaagggaaaccttcaaaacataaccattccttccattcagacatatgctcaacccgcaaat |
117 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||| ||||||||| || ||||||| | | ||||||||| |||||| ||||| |||| ||| | |
|
|
| T |
7586371 |
ttcaacttgggacatttttttatagaaagctctttaagcaaaggaaacccttcaagatgtgaccattcctcccattccgacatcgaatcaaaatgcagaa |
7586470 |
T |
|
| Q |
118 |
tttcgagggatctaaatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgag |
217 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||| ||| |||| ||| || |||||| || | || |||||||||||| |||| || ||||| |
|
|
| T |
7586471 |
tttcaagggatctgaatggaacatttgtggaattattgccataaaattctttccctatgatccttattttatcacagcctgaaattgaaatctctttgag |
7586570 |
T |
|
| Q |
218 |
agaagggaattgcccaagtggtagaaactgggaaca |
253 |
Q |
| |
|
| |||||| ||| ||||||||| | |||| |||||| |
|
|
| T |
7586571 |
acaagggagttgtccaagtggtggcaactcggaaca |
7586606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 6734564 - 6734668
Alignment:
| Q |
132 |
aatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaattgcc |
231 |
Q |
| |
|
||||||||| ||| |||||||| ||| |||||||| | ||||||||| || ||| | |||| | |||||||||| |||||||||||||||| ||| | |
|
|
| T |
6734564 |
aatggaacaattgttgaattattgccataaaactcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtc |
6734663 |
T |
|
| Q |
232 |
caagt |
236 |
Q |
| |
|
||||| |
|
|
| T |
6734664 |
caagt |
6734668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 8570191 - 8570111
Alignment:
| Q |
311 |
ccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagac |
391 |
Q |
| |
|
|||||||||||||||||| || |||||| |||||||||||||| | | ||| ||||| ||||||||||| |||||||| |
|
|
| T |
8570191 |
ccaatttggaaagctactgccattgtagtatgtgatggtgagcctcttcaagttgctatttggttgaagagcatccaagac |
8570111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 391
Target Start/End: Original strand, 5248814 - 5249032
Alignment:
| Q |
173 |
aatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaattgcccaagtggtagaaactgggaacagagtttacatcccaacaat |
272 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||||||||| | || || | ||| |||| | || |||||||| | || |||||| | || |
|
|
| T |
5248814 |
aatgatctctattccatgacaacctgaaatataaagcttcttgagatagggaaacaactcaaatggtggcaaatgggaacaaaattcacatcctaccaga |
5248913 |
T |
|
| Q |
273 |
tcaagagatactaaattggctagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcg |
372 |
Q |
| |
|
|| |||||| |||||||| | |||| | |||||||||| |||||||||||| | |||| |||| |||||||| ||| | | ||||| ||||| | |
|
|
| T |
5248914 |
tccagagattctaaattgaacaaatgactacccccaagccagtttggaaagctagtgcctcgatagtgtttgatggtcagcatattaaggttactatttg |
5249013 |
T |
|
| Q |
373 |
gttgaagagcctccaagac |
391 |
Q |
| |
|
||| ||| ||||||||||| |
|
|
| T |
5249014 |
gttcaagggcctccaagac |
5249032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 6521554 - 6521449
Alignment:
| Q |
132 |
aatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaattgcc |
231 |
Q |
| |
|
||||||||| ||| |||||||| ||| |||| ||| | ||||||||| || ||| | |||| | |||||||||| |||||||||||||||| ||| | |
|
|
| T |
6521554 |
aatggaacaattgttgaattattgccataaaaatcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtc |
6521455 |
T |
|
| Q |
232 |
caagtg |
237 |
Q |
| |
|
|||||| |
|
|
| T |
6521454 |
caagtg |
6521449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 6528157 - 6528041
Alignment:
| Q |
275 |
aagagatactaaattggctagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggt |
374 |
Q |
| |
|
|||||||||||| |||| || |||| | ||| |||||||||||||| ||||||||| |||||| ||||| ||||| || | | ||| ||||| ||| |
|
|
| T |
6528157 |
aagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggt |
6528058 |
T |
|
| Q |
375 |
tgaagagcctccaagac |
391 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
6528057 |
tgtatagcctccaagac |
6528041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 8453428 - 8453508
Alignment:
| Q |
311 |
ccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagac |
391 |
Q |
| |
|
|||||||||||||||| ||||| |||| | |||||| |||||| | | ||||||||| ||||| |||||||||||||| |
|
|
| T |
8453428 |
ccaatttggaaagctattacctttgtattttgagatggtaagcctcttcaagtttctatttggttggagagcctccaagac |
8453508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 279 - 420
Target Start/End: Complemental strand, 35141634 - 35141493
Alignment:
| Q |
279 |
gatactaaattggctagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaa |
378 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
35141634 |
gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa |
35141535 |
T |
|
| Q |
379 |
gagcctccaagacggagacacatgcttcagtttctgagccat |
420 |
Q |
| |
|
||| |||||| || |||||||||||||| ||| ||||||||| |
|
|
| T |
35141534 |
gagactccaacactgagacacatgcttctgttactgagccat |
35141493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 825 - 908
Alignment:
| Q |
170 |
accaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaattgcccaagtggtagaaactgggaaca |
253 |
Q |
| |
|
||||||||||| || ||||| ||| |||||| ||||| |||||||||||||| | |||||||||||| |||| |||||||| |
|
|
| T |
825 |
accaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatgggaaca |
908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 391
Target Start/End: Complemental strand, 6574564 - 6574482
Alignment:
| Q |
309 |
agccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattcggttgaagagcctccaagac |
391 |
Q |
| |
|
||||||||||||||||| || || |||||| ||||||||||||||| ||||| ||||| ||| |||||||||| ||||| |
|
|
| T |
6574564 |
agccaatttggaaagctgctgccattgtagtatttgatggtgagcctctgtaggttgctatttggtcgaagagcctcaaagac |
6574482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 8914 - 8809
Alignment:
| Q |
132 |
aatggaacatttgatgaattatagccgcaaaactctggaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaattgcc |
231 |
Q |
| |
|
||||||||| ||| |||||||| ||| |||| ||| | ||||||||| || ||| | |||| | |||||||||| |||||||||||||||| ||| | |
|
|
| T |
8914 |
aatggaacaattgttgaattattgccataaaattcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtc |
8815 |
T |
|
| Q |
232 |
caagtg |
237 |
Q |
| |
|
|||||| |
|
|
| T |
8814 |
caagtg |
8809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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