View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_high_13 (Length: 376)
Name: NF16618_high_13
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 37510836 - 37510484
Alignment:
| Q |
16 |
ttttttccagctcctcgttatggcaactaataaaaatttgacggacaaccatgttgtcgtgtacaatttttgaggtcgattccatttctctcgtgacaaa |
115 |
Q |
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| T |
37510836 |
ttttttccagctcctcgttatggcaaccaataaaaatttgacggacaaccatgttgtcgtgtacaatttttgaggtcgattccatttctctcgtgacaaa |
37510737 |
T |
|
| Q |
116 |
gacggatttctagcaattcggaagtccaaaatgtagtttcattgctgcaaataagttgaggtgtaaagccaacacttttttctattgcttcaagggtata |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37510736 |
gacggatttctagcaattcagaagtccaaaatgtagtttcattgctgcaaataagttgaggtgtaaagccaacacttttttctattgcttcaagggtata |
37510637 |
T |
|
| Q |
216 |
tgctagaggcctaataccatagcgtccaagatcatctctaagattgcgacttccccaattatataatgcaaccgagaagtattgatgtatatcaaatgtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37510636 |
tgctagaggcctaataccatagcgtccaagatcatctgtaagattgcgacttccccaattatataatgcaaccgagaagtattgatgtatatcaaatgtt |
37510537 |
T |
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| Q |
316 |
ggataggaacatagaccgtgttttttccattgatttgaccaaagagtataatc |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37510536 |
ggataggaacatagaccgtgttttttccattgatttgaccaaagagtataatc |
37510484 |
T |
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