View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16618_high_18 (Length: 340)

Name: NF16618_high_18
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16618_high_18
NF16618_high_18
[»] chr1 (8 HSPs)
chr1 (8-325)||(45692943-45693260)
chr1 (31-299)||(24233489-24233754)
chr1 (31-147)||(24242927-24243043)
chr1 (31-159)||(25611036-25611164)
chr1 (236-299)||(23896421-23896484)
chr1 (228-299)||(24627052-24627123)
chr1 (107-146)||(25478731-25478770)
chr1 (245-297)||(25611292-25611344)
[»] chr7 (2 HSPs)
chr7 (22-146)||(1421236-1421360)
chr7 (231-298)||(1421451-1421517)
[»] scaffold0015 (1 HSPs)
scaffold0015 (235-299)||(40661-40725)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 45692943 - 45693260
Alignment:
Q  8 agagaagaatgagaactttctctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaagatttccataatcaggcaacggtattt 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45692943 agagaagaatgagaactttttctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaaaatttccataatcaggcaacggtattt 45693042  T
Q  108 cttgataagattccttccccaaatgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccacttatgaatattcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45693043 cttgataagattccttccccaaatgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccacttatgaatattcc 45693142  T
Q  208 caggtgaccataataaggagtcatagcagggaagtccttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttgctgaaagaa 307  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45693143 catgtgaccataataaggagtcatagcagggaggtccttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttgctgaaagaa 45693242  T
Q  308 tgccaatcataacagaac 325  Q
    ||||||||||||||||||    
T  45693243 tgccaatcataacagaac 45693260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 299
Target Start/End: Original strand, 24233489 - 24233754
Alignment:
Q  31 agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaagatttccataatcaggcaacggtatttcttgataagattccttccccaaa 130  Q
    |||||||||||||||||| |||||||| | | |||| ||| ||| |  || || |||| ||||||| |  ||||||||||||||||||||||||||||||    
T  24233489 agaaaatatgcacaagcactccctcatcatatccaaagtcgacaaaaaaaaatctccagaatcaggaactggtatttcttgataagattccttccccaaa 24233588  T
Q  131 tgaagagaaacaatggtagacaagtcatttgaatcgtaatatgtcaaccaattaactgtgccacttatgaatattcccaggtgaccataataaggagtca 230  Q
    |||||||||||||||  |  ||||||| |||| |  ||||| ||||||||||| ||||||||||  |  | || |||  |  ||||   | || ||  ||    
T  24233589 tgaagagaaacaatgacacccaagtcacttgagttataataagtcaaccaattcactgtgccacacacaactactccatgtcgacc---aaaacgaaaca 24233685  T
Q  231 tagcagggaagtccttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttgc 299  Q
    ||| |||||||||||||||||| ||||||||||| || || || |||||||||||||||||||||||||    
T  24233686 tagaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttgc 24233754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 24242927 - 24243043
Alignment:
Q  31 agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaagatttccataatcaggcaacggtatttcttgataagattccttccccaaa 130  Q
    |||||||| ||||||| | |||| ||| ||||||| ||||||| || ||| || |||||||||||||   |  || ||||| |||||||| |||||||||    
T  24242927 agaaaataggcacaagaaatcccgcatcacacccatggtcaacctaacaaaatctccataatcaggctgtgaaatatcttggtaagattctttccccaaa 24243026  T
Q  131 tgaagagaaacaatggt 147  Q
    | |||||||||||||||    
T  24243027 tcaagagaaacaatggt 24243043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 25611036 - 25611164
Alignment:
Q  31 agaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaagatttccataatcaggcaacggtatttcttgataagattccttccccaaa 130  Q
    ||||||||||||||| || || ||||| ||||||||| ||||  | |||| ||| |||| ||||||   ||  ||||||| ||||||||| ||||| |||    
T  25611036 agaaaatatgcacaaacaatctctcatcacacccaagttcaatttctcaaaattcccatgatcaggatgcgaaatttcttcataagattctttccctaaa 25611135  T
Q  131 tgaagagaaacaatggtagacaagtcatt 159  Q
    |||||||||||||||| | ||||| ||||    
T  25611136 tgaagagaaacaatggcatacaagccatt 25611164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 23896421 - 23896484
Alignment:
Q  236 gggaagtccttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttgc 299  Q
    ||||| ||||||||||| ||||| || | |||||||||| | |||||||| |||||||||||||    
T  23896421 gggaaatccttaatccttctccatgaatgtgtgcccaaaatgtgaactttcacttgagttttgc 23896484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 24627052 - 24627123
Alignment:
Q  228 tcatagcagggaagtccttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttgc 299  Q
    |||||| |||||| |||||| |||| ||||| || | |||||||||||||| ||  ||||||||||||||||    
T  24627052 tcatagaagggaaatccttagtccttctccatgaatgtgtgcccaaagtataaatgttaacttgagttttgc 24627123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 25478770 - 25478731
Alignment:
Q  107 tcttgataagattccttccccaaatgaagagaaacaatgg 146  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  25478770 tcttgataagactctttccccaaatgaagagaaacaatgg 25478731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 25611292 - 25611344
Alignment:
Q  245 ttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagtttt 297  Q
    ||||||||  ||||| | || ||||||||||||||||||| ||||||||||||    
T  25611292 ttaatccttttccaaaactcggtgcccaaagtatgaacttgaacttgagtttt 25611344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 1421236 - 1421360
Alignment:
Q  22 actttctctagaaaatatgcacaagcattccctcattacacccaaggtcaacatatcaagatttccataatcaggcaacggtatttcttgataagattcc 121  Q
    |||||||| |||||| ||||||||||| |||||||| ||||||||||| ||| |||  ||||||||||||| |||   |||||| |||||||||||||||    
T  1421236 actttctcgagaaaaaatgcacaagcaatccctcatcacacccaaggttaacttattcagatttccataatgaggttgcggtatctcttgataagattcc 1421335  T
Q  122 ttccccaaatgaagagaaacaatgg 146  Q
    |||||||||||||||||||||||||    
T  1421336 ttccccaaatgaagagaaacaatgg 1421360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 1421451 - 1421517
Alignment:
Q  231 tagcagggaagtccttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttg 298  Q
    ||| |||||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||||||||||    
T  1421451 tagaagggaagtccttaatccttctccaagagttggtg-ccaaagtatgaacttcaacttgagttttg 1421517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 40661 - 40725
Alignment:
Q  235 agggaagtccttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttgc 299  Q
    ||||||||| | |||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  40661 agggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttgc 40725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University