View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_high_19 (Length: 327)
Name: NF16618_high_19
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 43395331 - 43395641
Alignment:
| Q |
7 |
aggttcacctcgctttgcatccccgtcgaagtcttcccttccatcttctgatcgaacagatgctctttctaggactaggtccgccagaaggtaacatttt |
106 |
Q |
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| T |
43395331 |
aggttcacctcgctttgcatccccgtcgaagtcttcccttccatcttctgatcgaacagatgctctttctaggactaggtccgccagaaggtaacatttt |
43395430 |
T |
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| Q |
107 |
aatttatttcatact------acataaggaacataaacttcatcaaaacaaaaggaaataaaatttaattattagtaaatgtttagtttcatgcataaag |
200 |
Q |
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| T |
43395431 |
aatttatttcatactactactacataaggaacataaacttcatcaaaacataagaaaataaaatttaattattagtaaatgtttagtttcatgcataaag |
43395530 |
T |
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| Q |
201 |
aatctggtcgaaatacatattagaatctagatattaacctctaatatcattattttattttgcgaatgtacgggtctttttactagttaaaattagaaat |
300 |
Q |
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| T |
43395531 |
aatctggtcgaaatacatattagaatctagatattaacctctaatatca-----ttattttgcgaatgtaagggtctttttactagttaaaattagaaat |
43395625 |
T |
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| Q |
301 |
cagcttaattgttcat |
316 |
Q |
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|||||||||||||||| |
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| T |
43395626 |
cagcttaattgttcat |
43395641 |
T |
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