View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16618_high_2 (Length: 794)

Name: NF16618_high_2
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16618_high_2
NF16618_high_2
[»] scaffold0085 (1 HSPs)
scaffold0085 (20-781)||(45154-45915)


Alignment Details
Target: scaffold0085 (Bit Score: 741; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 20 - 781
Target Start/End: Complemental strand, 45915 - 45154
Alignment:
Q  20 ttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagtgtctaacatcaacacaacactgacaggtataatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45915 ttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagtgtctaacatcaacacaacactgacaggtataatt 45816  T
Q  120 acattttattatgctannnnnnnaaattattatcggtctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctgtgtcagtgcttcatagatat 219  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45815 acattttattatgctatttttttaaattattatcggtctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctgtgtcagtgcttcatagatat 45716  T
Q  220 tatttgaatgaaacggaatggaacagcgttaaaccaaccatttgatcggttaaattgattaattagtacttttctttttgtgttaatatattaggtttta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45715 tatttgaatgaaacggaatggaacagcgttaaaccaaccatttgatcggttaaattgattaattagtacttttctttttgtgttaatatattaggtttta 45616  T
Q  320 ttatttgcttactttttaataccgtggcatttgaatttttaagtatttgatgcgcttttcattttaaaagcagattaaaattgactttaagaaaaatgta 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45615 ttatttgcttactttttaataccgtggcatttgaatttttaagtatttgatgcgcttttcattttaaaagcagattaaaattgactttaagaaaaatgta 45516  T
Q  420 attgaggaaatagtatttgcaactttttggatactaagaagcaaacctagtttttgtttaagcatgacaggggttttatagaaaaaggctgtttactgaa 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45515 attgaggaaatagtatttgcaactttttggatactaagaagcaaacctagtttttgtttaagcatgacaggggttttatagaaaaaggctgtttactgaa 45416  T
Q  520 atttggattgttatatcaaggtttttgatgtctttatgatcgcatagaagtatatttaacaattattctctgtaatatcgtggattatgtcgtgatcgca 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45415 atttggattgttatatcaaggtttttgatgtctttatgatcgcatagaagtatatttaacaattattctctgtaatatcgtggattatgtcgtgatcgca 45316  T
Q  620 atttaaaactttgcgcacggagaattgcttgaaaatttggtttttggatgatgcagaccaattcaaattgcacaaattcttcattctcagggacggaatc 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45315 atttaaaactttgcgcacggagaattgcttgaaaatttggtttttggatgatgcagaccaattcaaattgcacaaattcttcattctcagggacggaatc 45216  T
Q  720 atgtcggcacttgtgcaggcccgtgcccccactttgtttctgattttcttggtacctttgct 781  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45215 atgtcggcacttgtgcaggcccgtgcccccactttgtttctgattttcttggtacctttgct 45154  T

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