View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16618_high_21 (Length: 315)
Name: NF16618_high_21
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 31 - 298
Target Start/End: Original strand, 31840927 - 31841194
Alignment:
| Q |
31 |
ttcatgatcatcatgactattttgtggttaaccactatacactcttcaaagagcatttaaaagtaatcaagatactatgttgccgacacttatcaagtgg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31840927 |
ttcatgatcatcatgactattttgtggttaaccactatacactcttcaaagagcatttaaaagtaatcaagatactatgttgccgacacttatcaagtgg |
31841026 |
T |
|
| Q |
131 |
taaaatatatccatggcaccttttgtttcctttagttatggatctttccattttcaaatacaatacaataataaatgattttgggtccaaagaaaattca |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31841027 |
taaaatatatccatggcaccttttgtttcctttagttatggatctttccattttcaaatacaatacagtaataaatgattttgggtccaaagaaaattca |
31841126 |
T |
|
| Q |
231 |
ataaatgattgggaaaactagcgtaaatttagcacttcgctttcttaaatatttattggtttaactac |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31841127 |
ataaatgattgggaaaactagcgtaaatttagcacttcgctttcttaaatattgattggtttaactac |
31841194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University