View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_high_27 (Length: 267)
Name: NF16618_high_27
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 40146881 - 40147137
Alignment:
| Q |
1 |
gttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaa |
100 |
Q |
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| T |
40146881 |
gttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagccacaaaagaa |
40146980 |
T |
|
| Q |
101 |
tgactctgatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagatt |
200 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40146981 |
tgactctgatgataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagatt |
40147080 |
T |
|
| Q |
201 |
ggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg |
257 |
Q |
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| T |
40147081 |
ggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg |
40147137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 253
Target Start/End: Complemental strand, 8102953 - 8102812
Alignment:
| Q |
112 |
ataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa |
211 |
Q |
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||||||||||| |||| |||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || | ||||| ||||| |
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| T |
8102953 |
ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaa |
8102854 |
T |
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| Q |
212 |
aatatcatccctccaatcactttttacacatctttggcgctc |
253 |
Q |
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| T |
8102853 |
aatatcttcccttcaagcactttttgcacacctttggtgctc |
8102812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8103100 - 8103025
Alignment:
| Q |
1 |
gttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttcc |
76 |
Q |
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| T |
8103100 |
gttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaatgtcccatacgatttcc |
8103025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 7655657 - 7655742
Alignment:
| Q |
26 |
aacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
111 |
Q |
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| T |
7655657 |
aacgctggagcgttggtttccaaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatg |
7655742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 7606854 - 7606777
Alignment:
| Q |
7 |
atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttacta |
84 |
Q |
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| T |
7606854 |
atcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcacta |
7606777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 7629213 - 7629167
Alignment:
| Q |
33 |
gaacgttggtttccaagtggtattcaacatcccatacgatttccttt |
79 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
7629213 |
gaacgttggtttccaaatggtattcaacttcccatacgatttccttt |
7629167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 7615827 - 7615778
Alignment:
| Q |
30 |
ctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt |
79 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
7615827 |
ctagagcgttggtttccaaatggtgttcaacagcccatacgatttccttt |
7615778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 39082834 - 39082796
Alignment:
| Q |
142 |
tattccatttcacaaaggagaaaatcgctcaactgaaat |
180 |
Q |
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| T |
39082834 |
tattccatttcacaaaggagaaaatcgcggaactgaaat |
39082796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 7629084 - 7629008
Alignment:
| Q |
141 |
ttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatc |
217 |
Q |
| |
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|||||||| || |||||||||||||||| |||||||||| ||| ||||| |||||||||| || ||||||||| |
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| T |
7629084 |
ttattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatcaaaatatc |
7629008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 11969428 - 11969370
Alignment:
| Q |
108 |
gatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat |
166 |
Q |
| |
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||||| || |||||| ||||| || |||||||||||||||||||||||||| ||||||| |
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| T |
11969428 |
gatgaaaaagaaaaactcaatccaccagagaggttattccatttcacaaagcagaaaat |
11969370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 8935625 - 8935706
Alignment:
| Q |
30 |
ctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
111 |
Q |
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||||||||||||||||| |||| |||||| || |||||||||||||| ||| | ||| |||||||||| ||||||||| |
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| T |
8935625 |
ctagaacgttggtttccggatggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcactctgatg |
8935706 |
T |
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