View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_high_3 (Length: 564)
Name: NF16618_high_3
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 2517925 - 2517584
Alignment:
| Q |
19 |
ccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517925 |
ccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattac |
2517826 |
T |
|
| Q |
119 |
gttgattttgtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatgatgttttcatgtgctaaatgactcctttctttgtttagta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517825 |
gttgattttgtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatgatgttttcatgtgctaaatgactcctttctttgtttagta |
2517726 |
T |
|
| Q |
219 |
tctgctggctgtttggtcctacattctttttccgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtactta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517725 |
tctgctggctgtttggtcctacattctttttccgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtactta |
2517626 |
T |
|
| Q |
319 |
ttaggaactgaaagttcattgcttttatataattttcccatc |
360 |
Q |
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| T |
2517625 |
ttaggaactgaaagttcattgcttttatataatcttcccatc |
2517584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 2517474 - 2517395
Alignment:
| Q |
470 |
agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
549 |
Q |
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| T |
2517474 |
agcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
2517395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 1458802 - 1458896
Alignment:
| Q |
19 |
ccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
113 |
Q |
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| T |
1458802 |
ccctgcagctcaaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
1458896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 2428509 - 2428603
Alignment:
| Q |
19 |
ccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
113 |
Q |
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| T |
2428509 |
ccctgcagctcaaatacttttcaaaattgagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
2428603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 2513708 - 2513532
Alignment:
| Q |
19 |
ccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattac |
118 |
Q |
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||||||||| ||||||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||| || ||||||||||||| ||| |
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| T |
2513708 |
ccctgcagcacaaatacattttaaaattgagcacactgatgttcctctttcctactatacaggaattcttggtatgtgatccacaatttcaattttttat |
2513609 |
T |
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| Q |
119 |
gttgattt------tgtagtcaagaatgcacttgatgtgagtatgatatcaaggccttaagttatgatgttttcatg |
189 |
Q |
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| T |
2513608 |
gttgatttctaggctctagcacagagtgcacttgatgtcggtatgatatgaatgcgtcaagttatgatgttttcatg |
2513532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 473 - 549
Target Start/End: Original strand, 1458972 - 1459048
Alignment:
| Q |
473 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
549 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
1458972 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgt |
1459048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 473 - 549
Target Start/End: Original strand, 2428679 - 2428755
Alignment:
| Q |
473 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
549 |
Q |
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| T |
2428679 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgt |
2428755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 473 - 549
Target Start/End: Complemental strand, 2513111 - 2513035
Alignment:
| Q |
473 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
549 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
2513111 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctcccaagaaaggagagaatgtttttgt |
2513035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 2498107 - 2498019
Alignment:
| Q |
27 |
ctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttat |
115 |
Q |
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| T |
2498107 |
ctcaaatacttttcaaaattgagcacactgatgtcccactttcctactatactggaatactcggtatgttttcaacaatttcaatttat |
2498019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 474 - 549
Target Start/End: Complemental strand, 2506497 - 2506422
Alignment:
| Q |
474 |
caggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
549 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| || | || |||||||||||||||||||| |
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| T |
2506497 |
caggtatgccaggaatgactgcttatgctggtttctttgaagtaggcgctaccaagaaaggagagaatgtttttgt |
2506422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 2507048 - 2506970
Alignment:
| Q |
19 |
ccctgcagctcaaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtat |
97 |
Q |
| |
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|||||| || ||||||| |||||||||||| || || |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
2507048 |
ccctgcggcacaaatacatttcaaaattgagcatactgatgttcctctttcctactatactggaattctaggtatgtat |
2506970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 472 - 549
Target Start/End: Complemental strand, 2497772 - 2497695
Alignment:
| Q |
472 |
cacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgt |
549 |
Q |
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| T |
2497772 |
cacaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgt |
2497695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 473 - 545
Target Start/End: Original strand, 2435046 - 2435118
Alignment:
| Q |
473 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgttt |
545 |
Q |
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||||||||||| |||||||| || |||||||||||||||||| ||||| ||| || |||||||||||||||| |
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| T |
2435046 |
acaggtatgccgggaatgactgcatatgctggtttctttgaattaggcagtcctaagaaaggagagaatgttt |
2435118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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