View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_high_33 (Length: 243)
Name: NF16618_high_33
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_33 |
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| [»] scaffold0684 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 41009743 - 41009528
Alignment:
| Q |
19 |
tctttctatatacattataagacaatcatttaaccattgatcacccatctctttctcatccaacgtgcttctgttctgtagttatgttgtgttgtgcgca |
118 |
Q |
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| T |
41009743 |
tctttctatatacattataagacgatcatttaaccattgatcacccatctctttctcatccaacgtgcttctgttctgcagttatgttgtgttgtgcgca |
41009644 |
T |
|
| Q |
119 |
tttgccgagagaaagaagaatgaaaagcgtttgctgagaagtggagggaaagtgtgttcttgtgtttcaggctgagtttgtggaacaaacaaaaagaaaa |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41009643 |
tttgctgagagaaagaagaatgaaaagcgtttgctgagaagtggagggaaagtgtgttcttgtgtttcaggctgagtttgtggaacaaacaaaaagaaaa |
41009544 |
T |
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| Q |
219 |
ttaaaatttggatctg |
234 |
Q |
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|||||||||||||||| |
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| T |
41009543 |
ttaaaatttggatctg |
41009528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 18114654 - 18114605
Alignment:
| Q |
19 |
tctttctatatacattataagacaatcatttaaccattgatcacccatct |
68 |
Q |
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||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |
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| T |
18114654 |
tctttctatatacattacaagacgatcatttaaccattcatcactcatct |
18114605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 22972909 - 22972881
Alignment:
| Q |
38 |
agacaatcatttaaccattgatcacccat |
66 |
Q |
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| T |
22972909 |
agacaatcatttaaccattgatcacccat |
22972881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 12005469 - 12005423
Alignment:
| Q |
22 |
ttctatatacattataagacaatcatttaaccattgatcacccatct |
68 |
Q |
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|||||||||| ||| ||||| |||||||||||||||||||| ||||| |
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| T |
12005469 |
ttctatatacgttacaagacgatcatttaaccattgatcactcatct |
12005423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4205 - 4254
Alignment:
| Q |
19 |
tctttctatatacattataagacaatcatttaaccattgatcacccatct |
68 |
Q |
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|||||||||||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
4205 |
tctttctatatatgttacaagacaatcatttgagcattgatcacccatct |
4254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 3913 - 3864
Alignment:
| Q |
19 |
tctttctatatacattataagacaatcatttaaccattgatcacccatct |
68 |
Q |
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|||||||||||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
3913 |
tctttctatatatgttacaagacaatcatttgagcattgatcacccatct |
3864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 1112101 - 1112146
Alignment:
| Q |
21 |
tttctatatacattataagacaatcatttaaccattgatcacccat |
66 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
1112101 |
tttctatataagttacaagacaatcatttaaccattgatcatccat |
1112146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 12585748 - 12585776
Alignment:
| Q |
38 |
agacaatcatttaaccattgatcacccat |
66 |
Q |
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| T |
12585748 |
agacaatcatttaaccattgatcacccat |
12585776 |
T |
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