View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_high_42 (Length: 211)
Name: NF16618_high_42
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 15622706 - 15622576
Alignment:
| Q |
16 |
attttggaaacatttttgagacataatatatctgattatagttgatcacactaatataaactactactattaattaggtctcaaagatttcaacttaatg |
115 |
Q |
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| T |
15622706 |
attttggaaacatttttgagacataatatatctgactatagttgatcacactaatataaact---actattaattaggtctcaaagatttca--tcaatg |
15622612 |
T |
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| Q |
116 |
attcagtttgatgatggacaaattgctttatcaata |
151 |
Q |
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| T |
15622611 |
attcagtttgatgatggacaaattgctttatcaata |
15622576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 15687494 - 15687319
Alignment:
| Q |
16 |
attttggaaacatttttgagacataatatatctgattatagttgatcacactaatataaactactactattaattaggtctcaaagatttcaacttaatg |
115 |
Q |
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| T |
15687494 |
attttggaaacatttttgagaaatattttatctaattgtagtcgaccacactaatataaa--ac-attgttaattagatctcaaagatttcatcttaatg |
15687398 |
T |
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| Q |
116 |
attcagtttgatgatggacaaattgctttatcaatacctgaagatgtaaatag--tttattcttgatttaatcataatag |
193 |
Q |
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| T |
15687397 |
attcagtttg-tgaaagaaaaatttctttctcaattcttgaagatgaaaagagtatatattttttatttaatcataatag |
15687319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 29203667 - 29203726
Alignment:
| Q |
16 |
attttggaaacatttttgagacataatatatctgattatagttgatcacactaatataaa |
75 |
Q |
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| T |
29203667 |
attttggaaacatttttgagaaatattttatctaattgtagtcgaccacactaatataaa |
29203726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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