View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_high_8 (Length: 446)
Name: NF16618_high_8
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 24407495 - 24407339
Alignment:
| Q |
200 |
acatcagttcaaaacttacatgtgcaatttgtgaatagaatctaaatcatttttaacgttccaatatttgacacatttaaggtttaccaaaaattgcctc |
299 |
Q |
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| T |
24407495 |
acatcagttcaaaacttacatgtgcaatttgtgaatagaatctaaatcatttttaacgtcgcaatatttgacacatttgaggtttaccaaaaattgcctc |
24407396 |
T |
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| Q |
300 |
taaaacaaattgtggaacaaaatgaagcattagagaggaatcaccgt-ttttacaac |
355 |
Q |
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| T |
24407395 |
taaaacaaattgtggaacaaaatgaagcattagagaggaatcaccgtcttttacaac |
24407339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 24407733 - 24407637
Alignment:
| Q |
120 |
ccggtttaaatacaatgtcatgctcttcaacgttagtgacatagattcaatactctgacgcacattaaatatacaatgtcacatcagttcaaaactt |
216 |
Q |
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| T |
24407733 |
ccggtttaaatacaatgtcatgctcttgaacgttagtgacatagattcaatactctgacacacattaaatatacaatgtcacatcagttcaaaactt |
24407637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 24407835 - 24407794
Alignment:
| Q |
12 |
aagaacacataaaaattagagaatttgtaagcttcatggtgt |
53 |
Q |
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| T |
24407835 |
aagaacacataaaaattagagaatttgtaagcttcatggtgt |
24407794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 51142471 - 51142523
Alignment:
| Q |
206 |
gttcaaaacttacatgtgcaatttgtgaatagaatctaaatcatttttaacgt |
258 |
Q |
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| T |
51142471 |
gttcaaaacttacatgtgcaatttgtgtatataatccatatcttttttaacgt |
51142523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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