View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_10 (Length: 437)
Name: NF16618_low_10
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 36071346 - 36071108
Alignment:
| Q |
13 |
atactccatatgtccctaattatagggcttttttgaaactttgatttgttcctaaatataatctcttattaacaaatgatttgactcaagttaataaatt |
112 |
Q |
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| T |
36071346 |
atactccatatgtccgtgattatagggcttttttcaaactttgatttgttcctaaatataatctcttattaacaaatgatttgactcaagttaataaatt |
36071247 |
T |
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| Q |
113 |
tcacctaaagataaattatttggaaatcttttggcttaactcctaattgctaagacctttttccataagaattggaaagttaacacaaaataaaaatata |
212 |
Q |
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| T |
36071246 |
tcac-----gataaattatttgggaatcttttggcttaactcctaattgctaagacctttttctgtaaaaattggaaagttaacac--aataaaaatata |
36071154 |
T |
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| Q |
213 |
atcccttcttaatatggaaatcaaatgttcgacctggcttcaaatg |
258 |
Q |
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| T |
36071153 |
atcccttcttaatatggaaatcaaatgtccgacctggctccaaatg |
36071108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 260 - 421
Target Start/End: Complemental strand, 36071068 - 36070897
Alignment:
| Q |
260 |
gtgtggaattcacaaacctaaatcttgcatgaccaaaaggacctttaccgctt----------acttaaccttcttgaacacgtacttgggttacaacca |
349 |
Q |
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| T |
36071068 |
gtgtggaattcacaaacctaaaccttgcatgcccaaaaggacctttaccgcttcatggtaaatacttaaccttcttgaacgcgtacttgggttacaacca |
36070969 |
T |
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| Q |
350 |
gacaagatggatgtcaacacgccttatgcctccttcgtgaccatcacctgtaactgttattatatggccatg |
421 |
Q |
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| T |
36070968 |
gataagatggatgtcaacacgccttacgcctccttcgtgaccatcacctgtaactgttattatatggccatg |
36070897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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