View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_11 (Length: 435)
Name: NF16618_low_11
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 41651101 - 41651515
Alignment:
| Q |
7 |
tagataattctgaatgtctcaagctgaagtgaaattgggttgccatagtgaattggtgagcgttagccgtgccttggtgactgttagattcagatcaaat |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41651101 |
tagaaaattctgaatgtctcaagctgaagtgaaattgggttgccatagtgaattggtgagtgttagccgtgccttggtgactgttagattcagatcaaat |
41651200 |
T |
|
| Q |
107 |
---tcacaaaatatgtggattttgttataatcaaaattaccgagcttgaaatgcggacaatccgatctttatgcaacgctcaacactcctttctgacggt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41651201 |
agttcacaaaatatgtggattttgttataatcaaaattaccgagcttgaaatgcggacaatccgatctttatgcaacgctcaacactcctttctgacggt |
41651300 |
T |
|
| Q |
204 |
tatgcattttaaatgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41651301 |
tatgcattttaaatgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaa |
41651400 |
T |
|
| Q |
304 |
tgccaaattttgagtgctctcattatgccaattttgtatgtaacaattattctatcacatggcataccaagcctttagaacataactcaatgcatcaatt |
403 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41651401 |
tgccaaattttgagtg--ctcattatgccaattttgtatgtaacaattattctatcacatggcataccaagcctttagaacataactcaatgcatcaatt |
41651498 |
T |
|
| Q |
404 |
attgttgtacttgtaac |
420 |
Q |
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||||||||||||||||| |
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| T |
41651499 |
attgttgtacttgtaac |
41651515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 184 - 420
Target Start/End: Complemental strand, 43226850 - 43226606
Alignment:
| Q |
184 |
caacactcctttctgacggttatgcattttaaatgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattct-gttttttac |
282 |
Q |
| |
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|||||||||| ||||||||||||||| || || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
43226850 |
caacactcctctctgacggttatgcacttcaactgtttaagatatttttgtgtttttaattcaatcatgccaaaatcaaacatgaattctatttttttac |
43226751 |
T |
|
| Q |
283 |
atttgcatattggcaaactaatgccaaattttgagtgctctcattatgccaattttgtatgtaacaattattctatcacatggcatacc---------aa |
373 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||| | ||||||| ||| |||||||||| || |
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| T |
43226750 |
atttgcatattggcacactaatgccaaattttaagtg--ctcattatgccaattttttatgtaaaagttattctgtcatatggcataccacttaacttaa |
43226653 |
T |
|
| Q |
374 |
gcctttagaacataactcaatgcatcaattattgttgtacttgtaac |
420 |
Q |
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| T |
43226652 |
gcctttgaagcataactcaatgcatcaattattgttgtaattgtaac |
43226606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 43227091 - 43226965
Alignment:
| Q |
7 |
tagataattctgaatgtctcaagctgaagtgaaattgggttgccatagtgaattggtgagcgttag-ccgtgccttggtgactgttagattcagatcaaa |
105 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |
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| T |
43227091 |
tagaaaattctgaatctctcaagctgatgtgaaattgggttgccatagtgaattggtgagcgttagtccgtgccttgatgaccgttagattcagatcaaa |
43226992 |
T |
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| Q |
106 |
---ttcacaaaatatgtggattttgtt |
129 |
Q |
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|||||||||||||||||||||||| |
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| T |
43226991 |
tagttcacaaaatatgtggattttgtt |
43226965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 43205581 - 43205480
Alignment:
| Q |
217 |
tgtttaagatatttctgtgtttttagttcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaaattttga |
316 |
Q |
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|||||||| | |||||||||||||| |||||| | || ||| ||||||||||||||||||| | | || ||||||||||||| |||||||||||||| |
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| T |
43205581 |
tgtttaagttgtttctgtgtttttaattcaattaggcgaaagtcaaacatgaattctgtttctgctgtctgtatattggcaaactgatgccaaattttga |
43205482 |
T |
|
| Q |
317 |
gt |
318 |
Q |
| |
|
|| |
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|
| T |
43205481 |
gt |
43205480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 41657425 - 41657496
Alignment:
| Q |
244 |
tcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaaattttg |
315 |
Q |
| |
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|||||||||||||| | |||||||| || | ||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
41657425 |
tcaatcatgccaaagtgaaacatgacttatatttcttacattttcatattggcaaactgatgccaaattttg |
41657496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 244 - 420
Target Start/End: Complemental strand, 25929054 - 25928877
Alignment:
| Q |
244 |
tcaatcatgccaaaatcaaacatgaattctgttttttacatttgcatattggcaaactaatgccaaattttgagtgctctcattatgccaattttgtatg |
343 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
25929054 |
tcaaacatgccaaaatcaaacatgaattctgattttaa-atttgcatattggcaaactgatgccaaattttgagtgctct--ttgtgccaattttgtatg |
25928958 |
T |
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| Q |
344 |
taacaattattctatcacatggcatacca----agcctttagaacataactcaatgcatcaattattgttgtacttgtaac |
420 |
Q |
| |
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| ||| |||||| |||| ||||||||||| | ||||| ||||||||| ||||||||||||||||||||| ||||||| |
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| T |
25928957 |
ttacagttattcaatcatatggcataccacttaaccctttgaaacataacttaatgcatcaattattgttgtaattgtaac |
25928877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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