View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_16 (Length: 363)
Name: NF16618_low_16
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 30629225 - 30629571
Alignment:
| Q |
8 |
tgagaagaagaagtcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgttat------tctcca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30629225 |
tgagaagaagaagtcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgttattattattctcca |
30629324 |
T |
|
| Q |
102 |
tttccctttctacccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgctaaaacaggagaagaaccatc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30629325 |
tttccctttctacccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgccaaaacaggagaagaaccatc |
30629424 |
T |
|
| Q |
202 |
tttttcccaagacttgctaattaccatatctttcaatgattctctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagct |
301 |
Q |
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|||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30629425 |
tttttcccaagacttgttattctccatatctttcaatgattccctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagct |
30629524 |
T |
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| Q |
302 |
gcttgatcataagctaaagctgctgcttcagctgtatcaaatgtacc |
348 |
Q |
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| T |
30629525 |
gcttgatcataagctaaagctgctgcttcagctgtatcaaatgtacc |
30629571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 30623607 - 30623940
Alignment:
| Q |
21 |
tcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgttat------tctccatttccctttctac |
114 |
Q |
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| T |
30623607 |
tcaaactaagaagttggtccaaatattcagaacctaaatcttccaacaccaacacattttgtgaaacaatattattattattctccatttccctttctac |
30623706 |
T |
|
| Q |
115 |
ccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgctaaaacaggagaagaaccatctttttcccaagac |
214 |
Q |
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| T |
30623707 |
ccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgccaaaacaggagaagaaccatctttttcccaagac |
30623806 |
T |
|
| Q |
215 |
ttgctaattaccatatctttcaatgattctctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataag |
314 |
Q |
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| T |
30623807 |
ttgttattctccatatctttcaatgattccctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataag |
30623906 |
T |
|
| Q |
315 |
ctaaagctgctgcttcagctgtatcaaatgtacc |
348 |
Q |
| |
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||||||| || ||||||||||||||||||||||| |
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| T |
30623907 |
ctaaagcagcagcttcagctgtatcaaatgtacc |
30623940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 16252074 - 16252128
Alignment:
| Q |
291 |
ttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgt |
345 |
Q |
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| T |
16252074 |
ttgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgt |
16252128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 38862602 - 38862497
Alignment:
| Q |
225 |
ccatatctttcaatgattctctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgc |
324 |
Q |
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|||| ||||| | |||||||||||| || | ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| || |
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| T |
38862602 |
ccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagcagc |
38862503 |
T |
|
| Q |
325 |
tgcttc |
330 |
Q |
| |
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|||||| |
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|
| T |
38862502 |
tgcttc |
38862497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 345
Target Start/End: Complemental strand, 38830824 - 38830761
Alignment:
| Q |
282 |
atcctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgt |
345 |
Q |
| |
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|||||| |||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
38830824 |
atcctcgtgttaagaaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgt |
38830761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 38831054 - 38831016
Alignment:
| Q |
43 |
atattcagaacccaaatcttccaacaccaacacattttg |
81 |
Q |
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| T |
38831054 |
atattcagaacccaaatcttccaacaccaacacattttg |
38831016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 19892783 - 19892853
Alignment:
| Q |
260 |
ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgctgcttc |
330 |
Q |
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| T |
19892783 |
ggaaaattcaacactgccaatgaaccttttgctgaaaaagcggcttggtcataagctaaagcggcttcttc |
19892853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 19719892 - 19719962
Alignment:
| Q |
260 |
ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgctgcttc |
330 |
Q |
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| T |
19719892 |
ggaaaattcaacactgccaatgaacctcttgctaaaaaagcagcttggtcgtaagctaaagcagcttcttc |
19719962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 4420143 - 4420195
Alignment:
| Q |
296 |
aaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtacc |
348 |
Q |
| |
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||||| |||| ||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
4420143 |
aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtacc |
4420195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 38013342 - 38013394
Alignment:
| Q |
297 |
aagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtacct |
349 |
Q |
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||||||| | ||||||||| ||||||||| | || |||||||||||||||||| |
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| T |
38013342 |
aagctgcgttatcataagcaaaagctgcttcctctgctgtatcaaatgtacct |
38013394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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