View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_17 (Length: 356)
Name: NF16618_low_17
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 44786988 - 44787315
Alignment:
| Q |
12 |
gaaaatcccgcggtgggaactgcggtcgcgcctaccagatccaccaaagtagtgatggcaccaccgtgtaagcagttactagaattctgcaaataaatga |
111 |
Q |
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| T |
44786988 |
gaaaatcccgcggtgggaactgcagttgcgcctaccagatccaccaaagtagtgatggcaccaccgtgtaagcagttactagaattctgcaaataaatga |
44787087 |
T |
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| Q |
112 |
aaaagaacaaaatccattaatgttatttattagggaaagataaaaagatgaaaagagtaagatacgaacaagtaaattgggaggtatcttcattgagaaa |
211 |
Q |
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| T |
44787088 |
aaaagaacaaaatccattaatgttatttattatggaaagataaaaagatgaaaagagtaagatacgaacaagtaaattgggaggtatcttcattgagaaa |
44787187 |
T |
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| Q |
212 |
acgatacggccaggctcaatgagatcaaggcgtaagccacgtacgactagatgtcccaaaaactcctgaggcaattcattgtctaccgttggtgctaatt |
311 |
Q |
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| T |
44787188 |
acgatacggccaggctcaatgagatcaaggcgtaagccacgtacgactagatgtcccaaaaactcctgaggcaattcattgtctaccgttggtgctgatt |
44787287 |
T |
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| Q |
312 |
cttctcctttcttctccaagtacctctt |
339 |
Q |
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| T |
44787288 |
cttctcctttcttctccaagtacctctt |
44787315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 298
Target Start/End: Original strand, 44792951 - 44793091
Alignment:
| Q |
158 |
gatgaaaagagtaagatacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccaggctcaatgagatcaaggcgtaagccacgtacga |
257 |
Q |
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| T |
44792951 |
gatgaatagtgtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgaccaggttcaatgcgatccaatcgtaggccgcgcaagg |
44793050 |
T |
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| Q |
258 |
ctagatgtcccaaaaactcctgaggcaattcattgtctacc |
298 |
Q |
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| T |
44793051 |
ttagatgttccagaaactcctgaggcaattcatcgtctacc |
44793091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 44801250 - 44801313
Alignment:
| Q |
174 |
tacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccaggctcaatgagatc |
237 |
Q |
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| T |
44801250 |
tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatc |
44801313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 44789250 - 44789315
Alignment:
| Q |
14 |
aaatcccgcggtgggaactgcggtcgcgcctaccagatccaccaaagtagtgatggcaccaccgtg |
79 |
Q |
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| T |
44789250 |
aaatccagcggcgggaattgcagctgcgcctatcacatccaccaaagtagtgatggcaccaccgtg |
44789315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 44805762 - 44805843
Alignment:
| Q |
194 |
ggtatcttcattgagaaaacgatacggccaggctcaatgagatcaaggcgtaagccacgtacgactagatgtcccaaaaact |
275 |
Q |
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| T |
44805762 |
ggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagatgttccagaaact |
44805843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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