View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_18 (Length: 354)
Name: NF16618_low_18
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 54 - 342
Target Start/End: Original strand, 2145201 - 2145480
Alignment:
| Q |
54 |
caattataagatcaaactcttaccatacatcatagttcacttgcttaactataatcttcaatattggagtacttgcttatttcattctcaagaatataac |
153 |
Q |
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| T |
2145201 |
caattatgagatcaaactcttaccatacatcatagaccacttgcttaactataatcttcaatattggagtacttgcttatttcattctcaagaatataac |
2145300 |
T |
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| Q |
154 |
atgttnnnnnnnnnnnnaccacttaggagatttgagctaggccctagcaatatttcacaaagattcttgttacctttatgcatatatgttttattttgta |
253 |
Q |
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| T |
2145301 |
atgttcccc---------ccacttaggagattttagctaggccctagcaatatttcacaaagattcttgttacccttatgcatatatgttttattttgta |
2145391 |
T |
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| Q |
254 |
aagtcgttacctggtatcattatgcatgtgtttctatcaatcattgatattgctcccttttctgactctaattgtgctttcatattctt |
342 |
Q |
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| T |
2145392 |
aagtcattacctggtatcattatgcatgtgtttctatcaatcattgttattgctcccttttctgactccaattgtgctttcattttctt |
2145480 |
T |
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