View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16618_low_22 (Length: 323)
Name: NF16618_low_22
Description: NF16618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16618_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 49498493 - 49498192
Alignment:
| Q |
1 |
actcattaacacatagccgataagcactacgtacaaaataacggccannnnnnnncctgctttccagattaaacggtcatcttgaacctgagcaataagt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49498493 |
actcattaacacatagccgataagcactacgtacagaataacgaccattttttt--ctgctttccagattaaacggtcatcttgaacctgagcaataagt |
49498396 |
T |
|
| Q |
101 |
ggtgtgctaagaatcttagcagctatatcaacactaaaaacctggcgaactacctcttctttcctgctcttgttgtatagattcatcaaattattaatgg |
200 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49498395 |
ggcgtgttaagaatcttagcagctatatcaacactaaaaatctggcgaactacctcttctttcctgctcttgttgtatagattcatcaaattattaatgg |
49498296 |
T |
|
| Q |
201 |
taacattctgaacaaaacgagcacctacaatacttccatcaatacactccccgttagataaccaggggtcattcaaaatagaaatagaagagtcggaacc |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49498295 |
taacattctgaacaaaatgagcacctacaatacttccatcaatacactccccgttagataaccaagggtcattcaaaatagaaatagaagagtcggaacc |
49498196 |
T |
|
| Q |
301 |
aata |
304 |
Q |
| |
|
|||| |
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|
| T |
49498195 |
aata |
49498192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 18341920 - 18341808
Alignment:
| Q |
176 |
tatagattcatcaaattattaatggtaacattctgaacaaaacgagcacctacaatacttccatcaatacactccccgttagataaccaggggtcattca |
275 |
Q |
| |
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|||| ||||||||||||||| || || ||||||| ||||||| |||||||| |||| |||||||| |||||||| |||| |||||| ||||||| |
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| T |
18341920 |
tataaattcatcaaattattgatagtgacattctaaacaaaatgagcacctttaatatcaccatcaatgcactccccattaggtaaccacaattcattca |
18341821 |
T |
|
| Q |
276 |
aaatagaaataga |
288 |
Q |
| |
|
|||||| |||||| |
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| T |
18341820 |
aaataggaataga |
18341808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 59 - 302
Target Start/End: Complemental strand, 33649889 - 33649647
Alignment:
| Q |
59 |
gctttccagattaaacggtcatcttgaacctgagcaataagtggtgtgctaagaatcttagcagctatatcaacactaaaaacctggcgaactacctctt |
158 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33649889 |
gctttccagattaaacggtcatcttggacctgagcaataagtggcatgttaagaatcttagcagctatatcaacgctaaaaacctggcgaactacctctt |
33649790 |
T |
|
| Q |
159 |
-ctttcctgctcttgttgtatagattcatcaaattattaatggtaacattctgaacaaaacgagcacctacaatacttccatcaatacactccccgttag |
257 |
Q |
| |
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| || | ||||||||||||||||||||||||||||||||||| ||||| | ||| |||| |||| || ||||||||| ||||||||||||||||||||| |
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| T |
33649789 |
acatttcagctcttgttgtatagattcatcaaattattaatggcaacataccgaa-aaaatgagctcc-acaatactttcatcaatacactccccgttag |
33649692 |
T |
|
| Q |
258 |
ataaccaggggtcattcaaaatagaaatagaagagtcggaaccaa |
302 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||||||||| |
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|
| T |
33649691 |
ataaccaagggtcattcaaaatagaaatagaaaattcggaaccaa |
33649647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 11819519 - 11819574
Alignment:
| Q |
80 |
tcttgaacctgagcaataagtggtgtgctaagaatcttagcagctatatcaacact |
135 |
Q |
| |
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||||| ||||| |||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
11819519 |
tcttgtacctgcgcaataagcggtgtgtgaagaatcttatcagctatatcaacact |
11819574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 59 - 292
Target Start/End: Original strand, 29956571 - 29956804
Alignment:
| Q |
59 |
gctttccagattaaacggtcatcttgaacctgagcaataagtggtgtgctaagaatcttagcagctatatcaacactaaaaacctggcgaactacctctt |
158 |
Q |
| |
|
||||||||||||||||| |||||||| | || ||||||||||| ||| ||| ||||||| |||||||||||||||||| ||||| |||||||||||||| |
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| T |
29956571 |
gctttccagattaaacgatcatcttggaactaggcaataagtggcgtgttaaaaatcttatcagctatatcaacactaagaacctagcgaactacctctt |
29956670 |
T |
|
| Q |
159 |
ctttcctgctcttgttgtatagattcatcaaattattaatggtaacattctgaacaaaacgagcacctacaatacttccatcaatacactccccgttaga |
258 |
Q |
| |
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| |||| ||||| || ||||||||| ||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||| |||| ||| |
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| T |
29956671 |
cattccagctctagtcgtatagattaatcaaattattaatggtaacattctaaccaaaacgagctcctataatacttccatcaatacactctccgtcaga |
29956770 |
T |
|
| Q |
259 |
taaccaggggtcattcaaaatagaaatagaagag |
292 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
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| T |
29956771 |
taaccaagggtcattcaaaatagaaatagaagag |
29956804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 252
Target Start/End: Complemental strand, 19234611 - 19234439
Alignment:
| Q |
80 |
tcttgaacctgagcaataagtggtgtgctaagaatcttagcagctatatcaacactaaaaacctggcgaactacctcttctttcctgctcttgttgtata |
179 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||| || ||||| ||||| |||| ||| |||| |||||| || | |
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| T |
19234611 |
tcttgtacctgagcaataagtggcgtgtgaagaatcttatcagctatatcaacactgaatacctgacgaaccaccttttcgttccaattcttgtcataga |
19234512 |
T |
|
| Q |
180 |
gattcatcaaattattaatggtaacattctgaacaaaacgagcacctacaatacttccatcaatacactcccc |
252 |
Q |
| |
|
||| |||||| | || | |||||||||||||||||| |||||||| ||| | || |||||||||||||| |
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| T |
19234511 |
catttatcaaactgttgacggtaacattctgaacaaagtgagcacctgtaatgccaccgtcaatacactcccc |
19234439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 59 - 288
Target Start/End: Complemental strand, 20929154 - 20928925
Alignment:
| Q |
59 |
gctttccagattaaacggtcatcttgaacctgagcaataagtggtgtgctaagaatcttagcagctatatcaacactaaaaacctggcgaactacctctt |
158 |
Q |
| |
|
|||||||| || || || || ||||| ||||| ||||||||||| || ||||||||| | |||||||||||| |||| |||| |||||||||| || |
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| T |
20929154 |
gctttccaaataaatcgatcctcttgtacctgggcaataagtggcgtatgaagaatcttgtctgctatatcaacattaaacacctaacgaactacctgtt |
20929055 |
T |
|
| Q |
159 |
ctttcctgctcttgttgtatagattcatcaaattattaatggtaacattctgaacaaaacgagcacctacaatacttccatcaatacactccccgttaga |
258 |
Q |
| |
|
| |||| ||||| |||| ||||||||||||||| ||||||||||| ||||||||| ||||| || |||| |||||||| |||||||| ||||| |
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|
| T |
20929054 |
cattccaactcttaccatataaattcatcaaattattgatggtaacattttgaacaaaatgagcatctgtaatatcaccatcaatgcactccccattaga |
20928955 |
T |
|
| Q |
259 |
taaccaggggtcattcaaaatagaaataga |
288 |
Q |
| |
|
|||||| || ||||||||||| ||||||| |
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|
| T |
20928954 |
taaccacggttcattcaaaatcaaaataga |
20928925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 41339879 - 41339713
Alignment:
| Q |
122 |
gctatatcaacactaaaaacctggcgaactacctcttctttcctgctcttgttgtatagattcatcaaattattaatggtaacattctgaacaaaacgag |
221 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||| ||| |||| ||||| |||| ||||||||||||||| ||||||||||||| || |||| ||| |
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|
| T |
41339879 |
gctatatcaacattaaacacctaacgaactacctgttcattccaactcttaccatataaattcatcaaattattgatggtaacattctaaaaaaaatgag |
41339780 |
T |
|
| Q |
222 |
cacctacaatacttccatcaatacactccccgttagataaccaggggtcattcaaaatagaaataga |
288 |
Q |
| |
|
|| || |||| |||||||| |||||||| ||||||||||| || ||||||||||| |||||||| |
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|
| T |
41339779 |
catctgtaatatcaccatcaatgcactccccattagataaccacggttcattcaaaatcgaaataga |
41339713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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